RNA–Protein interactions for RNA: ENST00000495899.1

MRPL55-233, Transcript of mitochondrial ribosomal protein L55, human

TSL 2

Gene MRPL55, Length 790 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-233	ENST00000495899	CEACAM20	Q6UY09	585 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	NAPRT	Q6XQN6	538 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	DTX1	Q86Y01	620 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	OR5AR1	Q8NGP9	310 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	LKAAEAR1	Q8TD35	194 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	OR6C2	Q9NZP2	312 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	FOXJ2	Q9P0K8	574 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	WHRN	Q9P202	907 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	KLHL42	Q9P2K6	505 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	POMT2	Q9UKY4	750 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	CRYL1	Q9Y2S2	319 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	B3GALT1	Q9Y5Z6	326 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	ITPR1	Q14643	2758 aa		12.01	□□□□□ -0.49
MRPL55-233	ENST00000495899	IGHV5-51	A0A0C4DH38	117 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	C2orf74	A8MZ97	194 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	STMND1	H3BQB6	276 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	ZBTB11	O95625	1053 aa	Predicted RBP	12	□□□□□ -0.49
MRPL55-233	ENST00000495899	POLR2C	P19387	275 aa	Predicted RBP	12	□□□□□ -0.49
MRPL55-233	ENST00000495899	CHRM3	P20309	590 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	RPL21	P46778	160 aa	Known RBP	12	□□□□□ -0.49
MRPL55-233	ENST00000495899	SEPHS1	P49903	392 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	CSE1L	P55060	971 aa	Known RBP	12	□□□□□ -0.49
MRPL55-233	ENST00000495899	CKAP4	Q07065	602 aa	Known RBP	12	□□□□□ -0.49
MRPL55-233	ENST00000495899	CALCOCO2	Q13137	446 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	CLN3	Q13286	438 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	CTBP1	Q13363	440 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	FRG1	Q14331	258 aa	Known RBP	12	□□□□□ -0.49
MRPL55-233	ENST00000495899	HSP90AA5P	Q58FG0	334 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	ANKS6	Q68DC2	871 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	TTC23L	Q6PF05	361 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	C19orf48	Q6RUI8	117 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	KIAA0408	Q6ZU52	694 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	KCNMB4	Q86W47	210 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	VRK3	Q8IV63	474 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	DENND6A	Q8IWF6	608 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	KCNJ9	Q92806	393 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	NAF1	Q96HR8	494 aa	Known RBP	12	□□□□□ -0.49
MRPL55-233	ENST00000495899	C16orf45	Q96MC5	204 aa	Predicted RBP	12	□□□□□ -0.49
MRPL55-233	ENST00000495899	FCRL4	Q96PJ5	515 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	MAP3K3	Q99759	626 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	HGH1	Q9BTY7	390 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	TRIM31	Q9BZY9	425 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	SPRY4	Q9C004	299 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	TWSG1	Q9GZX9	223 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	CCDC68	Q9H2F9	335 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	C1GALT1	Q9NS00	363 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	IL1RAPL1	Q9NZN1	696 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	ZC3H7B	Q9UGR2	993 aa	Known RBP	12	□□□□□ -0.49
MRPL55-233	ENST00000495899	CDC23	Q9UJX2	597 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	FBXO5	Q9UKT4	447 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	SNX24	Q9Y343	169 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	TEX264	Q9Y6I9	313 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	PKD1L2	Q7Z442	2459 aa		12	□□□□□ -0.49
MRPL55-233	ENST00000495899	ACACA	Q13085	2346 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	CFAP47	Q6ZTR5	3102 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899		E5RI56	91 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899		E7ESA3	106 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	KIF2A	O00139	706 aa	Predicted RBP	11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	BTN3A3	O00478	584 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	BTN3A1	O00481	513 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	RAD51C	O43502	376 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	NIPSNAP2	O75323	286 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	KRT37	O76014	449 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	TPBGL	P0DKB5	382 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	FGF5	P12034	268 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	PRDX3	P30048	256 aa	Known RBP	11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	CCNF	P41002	786 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	ELK3	P41970	407 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	SLC1A2	P43004	574 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	ARL4D	P49703	201 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	KPNA2	P52292	529 aa	Known RBP	11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	TMPRSS3	P57727	454 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	PPP1CA	P62136	330 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	CAV1	Q03135	178 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	ACY1	Q03154	408 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	ABR	Q12979	859 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	TUBB2A	Q13885	445 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	GBX1	Q14549	363 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	NR6A1	Q15406	480 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	COL28A1	Q2UY09	1125 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	ZNF789	Q5FWF6	425 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	TMTC4	Q5T4D3	741 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	DUPD1	Q68J44	220 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	UNC5A	Q6ZN44	842 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	GALNT7	Q86SF2	657 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	ZFAND4	Q86XD8	727 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	IGDCC3	Q8IVU1	814 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	DCUN1D3	Q8IWE4	304 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	CNTN4	Q8IWV2	1026 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	ADGRF3	Q8IZF5	1079 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	D2HGDH	Q8N465	521 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	ZBTB2	Q8N680	514 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	SIDT2	Q8NBJ9	832 aa	Known RBP	11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	C2CD4A	Q8NCU7	369 aa	Predicted RBP	11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	MAGEC3	Q8TD91	643 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	FOPNL	Q96NB1	174 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	OR6C1	Q96RD1	312 aa		11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	CCNL2	Q96S94	520 aa	Predicted RBP	11.99	□□□□□ -0.49
MRPL55-233	ENST00000495899	TUBB2B	Q9BVA1	445 aa		11.99	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms