RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TMEM179BQ7Z7N9 219 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 TMEM150AQ86TG1 271 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 ANKRD46Q86W74 232 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 ZSWIM9Q86XI8 627 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 C8orf59Q8N0T1 100 aaPredicted RBP17.56■□□□□ 0.4
VIM-206ENST00000487938 NAT16Q8N8M0 369 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 HJURPQ8NCD3 748 aaPredicted RBP17.56■□□□□ 0.4
VIM-206ENST00000487938 MIPOL1Q8TD10 442 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 MBOAT4Q96T53 435 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 OSBPL10Q9BXB5 764 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 DNMT3BQ9UBC3 853 aaKnown RBP17.56■□□□□ 0.4
VIM-206ENST00000487938 STOML2Q9UJZ1 356 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 BNIP3LO60238 219 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 STK16O75716 305 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 EBLN1P0CF75 366 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 BCKDHAP12694 445 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 ZNF182P17025 639 aaPredicted RBP17.55■□□□□ 0.4
VIM-206ENST00000487938 PON2Q15165 354 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 USP39Q53GS9 565 aaKnown RBP17.55■□□□□ 0.4
VIM-206ENST00000487938 BROXQ5VW32 411 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 GPR26Q8NDV2 337 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 BPIFB6Q8NFQ5 453 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 OR13F1Q8NGS4 319 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 FNDC8Q8TC99 324 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 NETO1Q8TDF5 533 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 SNX19Q92543 992 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 CEP295NLQ96MC4 621 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 NTMT1Q9BV86 223 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 DLGAP4Q9Y2H0 992 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 BACE2Q9Y5Z0 518 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 U3KQV3 271 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 PIKFYVEQ9Y2I7 2098 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 ABLIM3O94929 683 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 CPNE6O95741 557 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 PDYNP01213 254 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 TFPTP0C1Z6 253 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 CRHBPP24387 322 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 XAF1Q6GPH4 301 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 ZC3H7AQ8IWR0 971 aaKnown RBP17.55■□□□□ 0.4
VIM-206ENST00000487938 MICU2Q8IYU8 434 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 GLB1L3Q8NCI6 653 aaPredicted RBP17.55■□□□□ 0.4
VIM-206ENST00000487938 TBC1D15Q8TC07 691 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 PNPT1Q8TCS8 783 aaKnown RBP17.55■□□□□ 0.4
VIM-206ENST00000487938 FRS2Q8WU20 508 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 INPP5KQ9BT40 448 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 LHPPQ9H008 270 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 HPS4Q9NQG7 708 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 C1orf109Q9NX04 203 aa17.55■□□□□ 0.4
VIM-206ENST00000487938 TRBV5-4A0A0C4DH59 114 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 HOXA2O43364 376 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 GREM1O60565 184 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 CREG1O75629 220 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 MYCLP1P12525 358 aaPredicted RBP17.54■□□□□ 0.4
VIM-206ENST00000487938 BFSP2Q13515 415 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 MACC1Q6ZN28 852 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 CROCCP3Q8IVE0 287 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 SLC22A15Q8IZD6 547 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 DCAF4L2Q8NA75 395 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 ZNF555Q8NEP9 628 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 SNRNP27Q8WVK2 155 aaKnown RBP17.54■□□□□ 0.4
VIM-206ENST00000487938 TANKQ92844 425 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 TUBA1CQ9BQE3 449 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 ACPTQ9BZG2 426 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 KAT8Q9H7Z6 458 aaKnown RBP17.54■□□□□ 0.4
VIM-206ENST00000487938 EXD2Q9NVH0 621 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 TRPS1Q9UHF7 1281 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 PRRG1O14668 218 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 HS6ST1O60243 411 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 CLDN9O95484 217 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 SERPINA1P01009 418 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 AGXTP21549 392 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 MAP4P27816 1152 aaKnown RBP17.54■□□□□ 0.4
VIM-206ENST00000487938 SPAM1P38567 509 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 RPIAP49247 311 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 KCNAB2Q13303 367 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 TTC23Q5W5X9 447 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 ANKRD26P1Q6NSI1 321 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 RETSATQ6NUM9 610 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 RFLNAQ6ZTI6 216 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 NXPE1Q8N323 547 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 PXYLP1Q8TE99 480 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 IGSF21Q96ID5 467 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 SH3GL1Q99961 368 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 ZNF334Q9HCZ1 680 aaPredicted RBP17.54■□□□□ 0.4
VIM-206ENST00000487938 ARL15Q9NXU5 204 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 CPQQ9Y646 472 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 ANAPC1Q9H1A4 1944 aa17.54■□□□□ 0.4
VIM-206ENST00000487938 SH3PXD2BA1X283 911 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 KRT87PA6NCN2 255 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 NPIPB15A6NHN6 443 aaPredicted RBP17.53■□□□□ 0.4
VIM-206ENST00000487938 NOL3O60936 208 aaKnown RBP17.53■□□□□ 0.4
VIM-206ENST00000487938 ABCB7O75027 752 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 WDR47O94967 919 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 SCELO95171 688 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 LRATO95237 230 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 HPRP00739 348 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 EPORP19235 508 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 CCL23P55773 120 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 GRSF1Q12849 480 aaKnown RBP eCLIP17.53■□□□□ 0.4
VIM-206ENST00000487938 CBX2Q14781 532 aaPredicted RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms