RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CCDC28AQ8IWP9 274 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 SMYD1Q8NB12 490 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 CAMKVQ8NCB2 501 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 OR52J3Q8NH60 311 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 GRAPLQ8TC17 118 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 TRPC4APQ8TEL6 797 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 PDCD6IPQ8WUM4 868 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 CPT1BQ92523 772 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 SLC35B4Q969S0 331 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 ISG20Q96AZ6 181 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 PPP1R14BQ96C90 147 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 ELP4Q96EB1 424 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 SAT2Q96F10 170 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 PANX2Q96RD6 677 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 JPH2Q9BR39 696 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 HAUS8Q9BT25 410 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 SCNM1Q9BWG6 230 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 SF3B5Q9BWJ5 86 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 SLC26A1Q9H2B4 701 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 TTYH1Q9H313 450 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 HIPK3Q9H422 1215 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 EVA1AQ9H8M9 152 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 ECT2Q9H8V3 914 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 IL26Q9NPH9 171 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 BEX4Q9NWD9 120 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 BARHL2Q9NY43 387 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 STX18Q9P2W9 335 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 TRMT6Q9UJA5 497 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 FBXW2Q9UKT8 454 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 CFL2Q9Y281 166 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 ADAM18Q9Y3Q7 739 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 DHX29Q7Z478 1369 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 TTC3P53804 2025 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 NPHP3Q7Z494 1330 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 A0A087WZY1 265 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 ERICH2A1L162 156 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 ELOVL7A1L3X0 281 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 MBD3L4A6NDZ8 208 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 MBD3L3A6NE82 208 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 OR6C75A6NL08 312 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 KDM4EB2RXH2 506 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 GOLGA6L19H0YKK7 550 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 RAB27BO00194 218 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 WRBO00258 174 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 ADAMDEC1O15204 470 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 TLX2O43763 284 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 LGI1O95970 557 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 CRYGCP07315 174 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 RETP07949 1114 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 GABRB1P18505 474 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 TCEA1P23193 301 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 KLRC1P26715 233 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 GABRB2P47870 512 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 SMSP52788 366 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 ATP5IP56385 69 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 ST8SIA6P61647 398 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 VBP1P61758 197 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 SRSF5Q13243 272 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 SNTB2Q13425 540 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 STIM1Q13586 685 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 ARHGEF7Q14155 803 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 KPNB1Q14974 876 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 HERC3Q15034 1050 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 GALNTL6Q49A17 601 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 RARS2Q5T160 578 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 TBC1D9BQ66K14 1250 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 RAET1GQ6H3X3 334 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF549Q6P9A3 640 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 TRIM65Q6PJ69 517 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 NHLRC1Q6VVB1 395 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF793Q6ZN11 406 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 DEF8Q6ZN54 512 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 C9orf47Q6ZRZ4 202 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 MTSS1LQ765P7 747 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 EFL1Q7Z2Z2 1120 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 HAUS6Q7Z4H7 955 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 VPS36Q86VN1 386 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 DHX40Q8IX18 779 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 KLHL7Q8IXQ5 586 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 SLC24A4Q8NFF2 622 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 DBF4BQ8NFT6 615 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 OR7G3Q8NG95 312 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 ELP5Q8TE02 316 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 OR1E3Q8WZA6 343 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 SAAL1Q96ER3 474 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 PGAM5Q96HS1 289 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 RBM41Q96IZ5 413 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 LINC00615Q96LM1 132 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 ANKRD27Q96NW4 1050 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 NECTIN4Q96NY8 510 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 OR1F2PQ96R84 312 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 PARK7Q99497 189 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 SSX3Q99909 188 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 TRMOQ9BU70 441 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 C9orf16Q9BUW7 83 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 HIPK2Q9H2X6 1198 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 TDRD3Q9H7E2 651 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 UPF2Q9HAU5 1272 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 TREM1Q9NP99 234 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms