RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 FKBP9P1Q75LS8 142 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 PLPP6Q8IY26 295 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 ZCCHC7Q8N3Z6 543 aaKnown RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 CLDN19Q8N6F1 224 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 ARL10Q8N8L6 244 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 FBLIM1Q8WUP2 373 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 LINC01599Q8WXQ3 324 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 ALPK1Q96QP1 1244 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 BARD1Q99728 777 aaKnown RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 ZNF490Q9ULM2 529 aaPredicted RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 ILVBLA1L0T0 632 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 ULK1O75385 1050 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 B3GALT4O96024 378 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 FTH1P02794 183 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 RPLP2P05387 115 aaKnown RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 BMP1P13497 986 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 RYKP34925 604 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 TWF1Q12792 350 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 KCNA10Q16322 511 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 TRIM71Q2Q1W2 868 aaKnown RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 PTRHD1Q6GMV3 140 aaKnown RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 C16orf59Q7L2K0 433 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 TRIM46Q7Z4K8 759 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 CYP4Z1Q86W10 505 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 RNF168Q8IYW5 571 aaPredicted RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 STK40Q8N2I9 435 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 GLB1L3Q8NCI6 653 aaPredicted RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 SPATA17Q96L03 361 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 SH3GL1Q99961 368 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 APOL5Q9BWW9 433 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 TRIT1Q9H3H1 467 aaKnown RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 AKIP1Q9NQ31 210 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 PCDHB9Q9Y5E1 797 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 PRSS21Q9Y6M0 314 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 VWA8A3KMH1 1905 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 KRBA1A5PL33 1030 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 CLDN11O75508 207 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 CELF2O95319 508 aaKnown RBP12.43□□□□□ -0.42
SHMT1-205ENST00000395684 GSNP06396 782 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ALPIP09923 528 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 CCDC159P0C7I6 412 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 CTPS1P17812 591 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ATP5C1P36542 298 aaKnown RBP12.43□□□□□ -0.42
SHMT1-205ENST00000395684 SLC11A2P49281 568 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 FKBP1BP68106 108 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 IL5RAQ01344 420 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 IFITM3Q01628 133 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ZNF846Q147U1 533 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 LAPTM4AQ15012 233 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 TRIM16LQ309B1 348 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 LAIR1Q6GTX8 287 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 NCEH1Q6PIU2 408 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 SLC24A5Q71RS6 500 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 GALNT5Q7Z7M9 940 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 SLCO6A1Q86UG4 719 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 CALHM3Q86XJ0 350 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 C2orf69Q8N8R5 385 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ZFP90Q8TF47 636 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 TAMM41Q96BW9 452 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 MTFMTQ96DP5 389 aaKnown RBP12.43□□□□□ -0.42
SHMT1-205ENST00000395684 EGFL8Q99944 293 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 CD244Q9BZW8 370 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 TNKS2Q9H2K2 1166 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 LRTM1Q9HBL6 345 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 MAGEE1Q9HCI5 957 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 SERHLQ9NQF3 203 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ERVK-18Q9QC07 812 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 MTRRQ9UBK8 725 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 DNMT3LQ9UJW3 386 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 OARD1Q9Y530 152 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ANGPTL3Q9Y5C1 460 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.43□□□□□ -0.42
SHMT1-205ENST00000395684 LOC730098B7Z3J9 87 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 SLC28A1O00337 649 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 BCKDKO14874 412 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ADAMTS4O75173 837 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 DNAJB5O75953 348 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 EOMESO95936 686 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 MYCLP1P12525 358 aaPredicted RBP12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ATF6P18850 670 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ACVR2AP27037 513 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 HPCAL1P37235 193 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 MAP2K4P45985 399 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 OCA2Q04671 838 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 MAD2L1Q13257 205 aaPredicted RBP12.43□□□□□ -0.42
SHMT1-205ENST00000395684 GPR17Q13304 367 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ZNF177Q13360 481 aaPredicted RBP12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ADPRMQ3LIE5 342 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 USP39Q53GS9 565 aaKnown RBP12.43□□□□□ -0.42
SHMT1-205ENST00000395684 PERM1Q5SV97 790 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 CACHD1Q5VU97 1274 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 RNF219Q5W0B1 726 aaPredicted RBP12.43□□□□□ -0.42
SHMT1-205ENST00000395684 CES5AQ6NT32 575 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 FAM151BQ6UXP7 276 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 SERPINA9Q86WD7 417 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 CARNMT1Q8N4J0 409 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 SOCS4Q8WXH5 440 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 FAM193BQ96PV7 902 aaPredicted RBP12.43□□□□□ -0.42
SHMT1-205ENST00000395684 MROQ9BYG7 248 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 ALOXE3Q9BYJ1 711 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms