RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 FRG2BQ96QU4 278 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 MRM3Q9HC36 420 aaKnown RBP12.93□□□□□ -0.34
NPHP4-203ENST00000378169 RUVBL1Q9Y265 456 aaKnown RBP12.93□□□□□ -0.34
NPHP4-203ENST00000378169 COMMD3-BMI1R4GMX3 469 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 LDB2O43679 373 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 ALOX12P18054 663 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 HNF1BP35680 557 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 SLC26A3P40879 764 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 CTSKP43235 329 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 TRAF3Q13114 568 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 GRB7Q14451 532 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 RFX4Q33E94 735 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 HDDC3Q8N4P3 179 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 PXYLP1Q8TE99 480 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 RERGQ96A58 199 aaPredicted RBP12.93□□□□□ -0.34
NPHP4-203ENST00000378169 C12orf66Q96MD2 445 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 CCDC106Q9BWC9 280 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 NUAK2Q9H093 628 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 SUCOQ9UBS9 1254 aaKnown RBP12.93□□□□□ -0.34
NPHP4-203ENST00000378169 KLHL3Q9UH77 587 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 PGLSO95336 258 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 ADH5P11766 374 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 CD1DP15813 335 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 FEN1P39748 380 aaKnown RBP12.93□□□□□ -0.34
NPHP4-203ENST00000378169 SLBPQ14493 270 aaKnown RBP eCLIP12.93□□□□□ -0.34
NPHP4-203ENST00000378169 PTGR1Q14914 329 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 INAQ16352 499 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 LDLRAP1Q5SW96 308 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 ZDHHC21Q8IVQ6 265 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 APCDD1Q8J025 514 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 GLB1L3Q8NCI6 653 aaPredicted RBP12.93□□□□□ -0.34
NPHP4-203ENST00000378169 SMIM14Q96QK8 99 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 DUSP26Q9BV47 211 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 FNDC11Q9BVV2 318 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 AMBNQ9NP70 447 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 CTPS2Q9NRF8 586 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 PNMA8CA0A1B0GUJ8 204 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 VARSP26640 1264 aaKnown RBP12.93□□□□□ -0.34
NPHP4-203ENST00000378169 CDKN1CP49918 316 aaPredicted RBP12.93□□□□□ -0.34
NPHP4-203ENST00000378169 ADARP55265 1226 aaKnown RBP12.93□□□□□ -0.34
NPHP4-203ENST00000378169 PERM1Q5SV97 790 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 PRR23CQ6ZRP0 262 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 PLEKHM3Q6ZWE6 761 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 C1orf52Q8N6N3 182 aaKnown RBP12.93□□□□□ -0.34
NPHP4-203ENST00000378169 SLC43A3Q8NBI5 491 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 ACVR1CQ8NER5 493 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 HERVK_113Q902F9 699 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 PLEKHG4BQ96PX9 1271 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 KLHL25Q9H0H3 589 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 MKS1Q9NXB0 559 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 MTRRQ9UBK8 725 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 VPS29Q9UBQ0 182 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 IL36AQ9UHA7 158 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 FBXW2Q9UKT8 454 aa12.93□□□□□ -0.34
NPHP4-203ENST00000378169 SCN7AQ01118 1682 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 STATHP02808 62 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 CAPZA2P47755 286 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 MED22Q15528 200 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 DGUOKQ16854 277 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 TNFAIP8L2Q6P589 184 aaPredicted RBP12.92□□□□□ -0.34
NPHP4-203ENST00000378169 MBOAT1Q6ZNC8 495 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 TAS1R1Q7RTX1 841 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 THAP5Q7Z6K1 395 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 TRPV1Q8NER1 839 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 FAM81AQ8TBF8 368 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 KHSRPQ92945 711 aaKnown RBP eCLIP12.92□□□□□ -0.34
NPHP4-203ENST00000378169 VMP1Q96GC9 406 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 ZNF607Q96SK3 696 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 ELAC1Q9H777 363 aaKnown RBP12.92□□□□□ -0.34
NPHP4-203ENST00000378169 KLHL1Q9NR64 748 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 TLR9Q9NR96 1032 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 GJD2Q9UKL4 321 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 ERVW-1Q9UQF0 538 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 OR10H1Q9Y4A9 318 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 ZNF780BQ9Y6R6 833 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 A0A1W2PP18 115 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 PI15O43692 258 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 POP7O75817 140 aaKnown RBP12.92□□□□□ -0.34
NPHP4-203ENST00000378169 TIE1P35590 1138 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 IFNGR2P38484 337 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 BDKRB1P46663 353 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 RGS1Q08116 209 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 UNC50Q53HI1 259 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 HLA-DQA1Q5Y7H0 255 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 CGB2Q6NT52 195 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 ARHGAP12Q8IWW6 846 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 DPP10Q8N608 796 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 IRF7Q92985 503 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 SPO11Q9Y5K1 396 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 UPK3BL1B0FP48 263 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 UPK3BL2E5RIL1 263 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 PCDH7O60245 1069 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 PRKD3O94806 890 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 SCELO95171 688 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 MED26O95402 600 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 TSPAN19P0C672 248 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 CCNA2P20248 432 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 APLP1P51693 650 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 ROR2Q01974 943 aaKnown RBP12.92□□□□□ -0.34
NPHP4-203ENST00000378169 COL9A2Q14055 689 aaPredicted RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms