RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ENO1P06733 434 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CCNA2P20248 432 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 LHCGRP22888 699 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 TPP2P29144 1249 aaPredicted RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CASP1P29466 404 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 NUDT2P50583 147 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 HKDC1Q2TB90 917 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 DPY19L3Q6ZPD9 716 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 HPS6Q86YV9 775 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 TRIM55Q9BYV6 548 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 PCDHA3Q9Y5H8 950 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 SPTAN1Q13813 2472 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 AP3D1O14617 1153 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 SEC22BO75396 215 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 RBMXL2O75526 392 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CYB561P49447 251 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 PMS1P54277 932 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 WNT3AP56704 352 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 GNB2P62879 340 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 SRSF5Q13243 272 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 RUNX2Q13950 521 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 DCST1Q5T197 706 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 SLC2A7Q6PXP3 512 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 LRRC6Q86X45 466 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 IRF2BP1Q8IU81 584 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 C3orf20Q8ND61 904 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 RBM15Q96T37 977 aaKnown RBP eCLIP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 RAXQ9Y2V3 346 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 MBLAC1A4D2B0 266 aaPredicted RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 MAGEB3O15480 346 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 HNRNPRO43390 633 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 SNHG28P0DPA3 235 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 RYKP34925 604 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CHRNEQ04844 493 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 EFR3AQ14156 821 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 NKPD1Q17RQ9 610 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 GALNTL6Q49A17 601 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 Q6ZS52 159 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 VASH2Q86V25 355 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 COX18Q8N8Q8 333 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 OR4K2Q8NGD2 314 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 OR4L1Q8NH43 312 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 THAP4Q8WY91 577 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 RND1Q92730 232 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 PROX1Q92786 737 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 RSRC1Q96IZ7 334 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 ERRFI1Q9UJM3 462 aaPredicted RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 BRWD1Q9NSI6 2320 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 PAPPA2Q9BXP8 1791 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 SLC9B1P1A6NJY1 282 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CXCR1P25024 350 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 ACADVLP49748 655 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 RGS19P49795 217 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 PLA2G16P53816 162 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 EEF1A1P68104 462 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 SLC7A9P82251 487 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 EEF1A2Q05639 463 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 RAB39AQ14964 217 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 EEF1A1P5Q5VTE0 462 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 C11orf88Q6PI97 169 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 MIPOL1Q8TD10 442 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 KLHL29Q96CT2 875 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 AARSD1Q9BTE6 412 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CEP41Q9BYV8 373 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CCDC90BQ9GZT6 254 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 ARNT2Q9HBZ2 717 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 ADAP2Q9NPF8 381 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 EMC3Q9P0I2 261 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CAB39Q9Y376 341 aaPredicted RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF142P52746 1687 aaPredicted RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 PSTPIP1O43586 416 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 KRT4P19013 534 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 POU3F2P20265 443 aaPredicted RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 KIR2DL3P43628 341 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 RPL26P61254 145 aaKnown RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 PTP4A2Q12974 167 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 TSGA10IPQ3SY00 556 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 RINLQ6ZS11 566 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF454Q8N9F8 522 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 SLC43A3Q8NBI5 491 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 FGF14Q92915 247 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 ACTRT3Q9BYD9 372 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 WWP1Q9H0M0 922 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 SLCO3A1Q9UIG8 710 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 RPL26L1Q9UNX3 145 aaKnown RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 hCG_1807616A0A1W2PRN6 198 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 ZFAND5O76080 213 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 SPINK2P20155 84 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 GNALP38405 381 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 PRR5P85299 388 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 PDPK2PQ6A1A2 396 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 FBXL22Q6P050 247 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 NYAP1Q6ZVC0 841 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 BTN2A1Q7KYR7 527 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 FBXL14Q8N1E6 418 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 CADM2Q8N3J6 435 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 FIBINQ8TAL6 211 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 TCEAL3Q969E4 200 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 KAZALD1Q96I82 304 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms