RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 COMMD3Q9UBI1 195 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CNTN6Q9UQ52 1028 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CMAHPQ9Y471 501 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CLDN4O14493 209 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 ATP6AP2O75787 350 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 ZNF20P17024 532 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 AOC1P19801 751 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 ARL3P36405 182 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CCNFP41002 786 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 NKAPLQ5M9Q1 402 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 RNASEH2BQ5TBB1 312 aaKnown RBP14.04□□□□□ -0.16
COL7A1-201ENST00000328333 LENG8Q96PV6 779 aaPredicted RBP14.04□□□□□ -0.16
COL7A1-201ENST00000328333 NEUROD4Q9HD90 331 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.04□□□□□ -0.16
COL7A1-201ENST00000328333 PADI2Q9Y2J8 665 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CNTNAP4Q9C0A0 1308 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 HSPA12AO43301 675 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 FAM189A1O60320 539 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 INMTO95050 263 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 PGLSO95336 258 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CTSEP14091 401 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 LHCGRP22888 699 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CRISP3P54108 245 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 OMDQ99983 421 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 C19orf12Q9NSK7 152 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 PNPOQ9NVS9 261 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CEP290O15078 2479 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 HSBP1L1C9JCN9 74 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CSN2P05814 226 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 MMP8P22894 467 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 SLC22A10Q63ZE4 541 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 RPL13AP3Q6NVV1 102 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 C1orf186Q6ZWK4 172 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 HDAC2Q92769 488 aaKnown RBP14.04□□□□□ -0.16
COL7A1-201ENST00000328333 BTN2A3PQ96KV6 586 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 MAPKAP1Q9BPZ7 522 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 TMEM106CQ9BVX2 250 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 SYT4Q9H2B2 425 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 C12orf65Q9H3J6 166 aaKnown RBP14.04□□□□□ -0.16
COL7A1-201ENST00000328333 TAS2R10Q9NYW0 307 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 ACTR3BQ9P1U1 418 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 RNF6Q9Y252 685 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 GOT1P17174 413 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CLCN4P51793 760 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 HADHBP55084 474 aaKnown RBP14.04□□□□□ -0.16
COL7A1-201ENST00000328333 GNMTQ14749 295 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 TEX44Q53QW1 395 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 POC1BQ8TC44 478 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 LPGAT1Q92604 370 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 ELP3Q9H9T3 547 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 ENDOD1O94919 500 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 NELFEP18615 380 aaKnown RBP14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CAND1Q86VP6 1230 aaKnown RBP14.04□□□□□ -0.16
COL7A1-201ENST00000328333 SLC43A3Q8NBI5 491 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 STON2Q8WXE9 905 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 MCMBPQ9BTE3 642 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CCDC32Q9BV29 185 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 FTHL17Q9BXU8 183 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 TNFRSF10DQ9UBN6 386 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 DIP2BQ9P265 1576 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 IL3P08700 152 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 MPSTP25325 297 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 GRK6P43250 576 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 CTC1Q2NKJ3 1217 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 ENDOVQ8N8Q3 282 aaKnown RBP14.03□□□□□ -0.16
COL7A1-201ENST00000328333 COQ10BQ9H8M1 238 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 ADH1CP00326 375 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 GKN3PP0CG01 181 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 CTPS1P17812 591 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 INTS6LQ5JSJ4 861 aaKnown RBP14.03□□□□□ -0.16
COL7A1-201ENST00000328333 C9orf64Q5T6V5 341 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 ASTN1O14525 1302 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 C2P06681 752 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 NKX1-1Q15270 411 aaPredicted RBP14.03□□□□□ -0.16
COL7A1-201ENST00000328333 CMPK2Q5EBM0 449 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 PCDHGA11Q9Y5H2 935 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 KCNU1A8MYU2 1149 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 AURKAO14965 403 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 VTNP04004 478 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 CHMP24386 653 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 KIAA1614Q5VZ46 1190 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 OR4C15Q8NGM1 316 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 NECAB3Q96P71 396 aaPredicted RBP14.03□□□□□ -0.16
COL7A1-201ENST00000328333 BTBD1Q9H0C5 482 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 MCCD1P59942 119 aaPredicted RBP14.03□□□□□ -0.16
COL7A1-201ENST00000328333 TARDBPQ13148 414 aaKnown RBP eCLIP14.03□□□□□ -0.16
COL7A1-201ENST00000328333 TBC1D25Q3MII6 688 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 RAB11FIP5Q9BXF6 653 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 CHIAQ9BZP6 476 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 MAGP20916 626 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 FMO1Q01740 532 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 FSTL4Q6MZW2 842 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 CENPSQ8N2Z9 138 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 ATG4CQ96DT6 458 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 ART5Q96L15 291 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 CNOT6Q9ULM6 557 aaKnown RBP14.03□□□□□ -0.16
COL7A1-201ENST00000328333 PHF24Q9UPV7 400 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 UPP2O95045 317 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 IDH3AP50213 366 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 PFKPQ01813 784 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms