RNA–Protein interactions for RNA: ENST00000327554.2

CCDC60-201, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC60, Length 2,450 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-201ENST00000327554 ZMIZ2Q8NF64 920 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 KBTBD8Q8NFY9 601 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 NETO1Q8TDF5 533 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 SLC13A3Q8WWT9 602 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 DNASE1L2Q92874 299 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 NCLNQ969V3 563 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 FUBP1Q96AE4 644 aaKnown RBP12.53□□□□□ -0.4
CCDC60-201ENST00000327554 ESAMQ96AP7 390 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 IMP4Q96G21 291 aaKnown RBP12.53□□□□□ -0.4
CCDC60-201ENST00000327554 ZFYVE19Q96K21 471 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 AARSD1Q9BTE6 412 aaKnown RBP12.53□□□□□ -0.4
CCDC60-201ENST00000327554 DERL2Q9GZP9 239 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 R3HDMLQ9H3Y0 253 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 OSER1Q9NX31 292 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.53□□□□□ -0.4
CCDC60-201ENST00000327554 PRELID1Q9Y255 219 aa12.53□□□□□ -0.4
CCDC60-201ENST00000327554 POLR3HQ9Y535 204 aaPredicted RBP12.53□□□□□ -0.4
CCDC60-201ENST00000327554 NCF1BA6NI72 391 aaPredicted RBP12.52□□□□□ -0.4
CCDC60-201ENST00000327554 NCF1CA8MVU1 366 aaPredicted RBP12.52□□□□□ -0.4
CCDC60-201ENST00000327554 LOC110117498-PIK3R3F6TDL0 507 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 ARHGAP33O14559 1287 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 KLK8O60259 260 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 PCDHGA12O60330 932 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 RECQL4O94761 1208 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 TXNP10599 105 aaKnown RBP12.52□□□□□ -0.4
CCDC60-201ENST00000327554 NCF1P14598 390 aaPredicted RBP12.52□□□□□ -0.4
CCDC60-201ENST00000327554 HOXB8P17481 243 aaPredicted RBP12.52□□□□□ -0.4
CCDC60-201ENST00000327554 CYP2A7P20853 494 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 IFNA8P32881 189 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 MAGEA2P43356 314 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 GMPSP49915 693 aaPredicted RBP12.52□□□□□ -0.4
CCDC60-201ENST00000327554 CREMQ03060 361 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 SOX4Q06945 474 aaPredicted RBP12.52□□□□□ -0.4
CCDC60-201ENST00000327554 TIGD6Q17RP2 521 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 PROX2Q3B8N5 592 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 RAB41Q5JT25 222 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 ERAP2Q6P179 960 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 PAQR3Q6TCH7 311 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 ZNF517Q6ZMY9 492 aaPredicted RBP12.52□□□□□ -0.4
CCDC60-201ENST00000327554 MICAL3Q7RTP6 2002 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 TCAIMQ8N3R3 496 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 PIK3R3Q92569 461 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 TBC1D20Q96BZ9 403 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 CDCA5Q96FF9 252 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 Q96MT0 163 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 MYOCQ99972 504 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 NXF3Q9H4D5 531 aaKnown RBP12.52□□□□□ -0.4
CCDC60-201ENST00000327554 ZNF112Q9UJU3 913 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 BTBD3Q9Y2F9 522 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 MED16Q9Y2X0 877 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 LYVE1Q9Y5Y7 322 aa12.52□□□□□ -0.4
CCDC60-201ENST00000327554 A0A0X1KG70 313 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 PNMA8CA0A1B0GUJ8 204 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 HMX3A6NHT5 357 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 CD3EAPO15446 510 aaKnown RBP12.52□□□□□ -0.41
CCDC60-201ENST00000327554 RPLP0P05388 317 aaKnown RBP12.52□□□□□ -0.41
CCDC60-201ENST00000327554 UBL4AP11441 157 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 AKAP5P24588 427 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 RRM2P31350 389 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 RFX2P48378 723 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 UGT2B15P54855 530 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 ERVPABLB-1P60509 514 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 PTPRCAPQ14761 206 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 TBCEQ15813 527 aaPredicted RBP12.52□□□□□ -0.41
CCDC60-201ENST00000327554 PARP15Q460N3 678 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 SPANXN2Q5MJ10 180 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 TIGD7Q6NT04 549 aaPredicted RBP12.52□□□□□ -0.41
CCDC60-201ENST00000327554 SNX20Q7Z614 316 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 RIOX2Q8IUF8 465 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 FBXO16Q8IX29 292 aaPredicted RBP12.52□□□□□ -0.41
CCDC60-201ENST00000327554 PLPP6Q8IY26 295 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 PHACTR4Q8IZ21 702 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 ELMOD2Q8IZ81 293 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 C10orf111Q8N326 155 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 OR56A4Q8NGH8 313 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 RNF34Q969K3 372 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 PYURFQ96I23 114 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 CDK15Q96Q40 435 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 HBEGFQ99075 208 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 PHOX2BQ99453 314 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 CCDC32Q9BV29 185 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 OR51E2Q9H255 320 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 TRIM39Q9HCM9 518 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 ACOXLQ9NUZ1 547 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 ERVK13-1Q9NX77 482 aa12.52□□□□□ -0.41
CCDC60-201ENST00000327554 A0A096LPI6 279 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 LOC100506127A0A0U1RQW1 187 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 NPEPPSL1A6NEC2 478 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 FAM25AB3EWG3 89 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 FAM25CB3EWG5 89 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 FAM25GB3EWG6 89 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 RECQL5O94762 991 aaPredicted RBP12.51□□□□□ -0.41
CCDC60-201ENST00000327554 GLP2RO95838 553 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 PEX11BO96011 259 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 MMP2P08253 660 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 C21orf33P30042 268 aaPredicted RBP12.51□□□□□ -0.41
CCDC60-201ENST00000327554 HOXC13P31276 330 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 CCR1P32246 355 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 CD86P42081 329 aa12.51□□□□□ -0.41
CCDC60-201ENST00000327554 PIK3CBP42338 1070 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms