RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 GRAMD2AQ8IUY3 354 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 TTC29Q8NA56 475 aaPredicted RBP13.21□□□□□ -0.29
SKA3-201ENST00000298260 OMA1Q96E52 524 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 RDH12Q96NR8 316 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 ZFP14Q9HCL3 533 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 KLHL20Q9Y2M5 609 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 COL1A2P08123 1366 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 NPEPPSL1A6NEC2 478 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 ARHGAP33O14559 1287 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 CNPP09543 421 aaKnown RBP13.21□□□□□ -0.29
SKA3-201ENST00000298260 PRR35P0CG20 571 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 HOXA9P31269 272 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 SLC19A1P41440 591 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 CD86P42081 329 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 DEFA1P59665 94 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 DEFA3P59666 94 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 ALDH6A1Q02252 535 aaKnown RBP13.21□□□□□ -0.29
SKA3-201ENST00000298260 MAD2L1BPQ15013 274 aaPredicted RBP13.21□□□□□ -0.29
SKA3-201ENST00000298260 TRIM60Q495X7 471 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 YIF1BQ5BJH7 314 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 KIAA0319Q5VV43 1072 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 GPR153Q6NV75 609 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 ANKRD46Q86W74 232 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 ARHGAP12Q8IWW6 846 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 ADHFE1Q8IWW8 467 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 MSRB3Q8IXL7 192 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 GPC2Q8N158 579 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 KRTCAP2Q8N6L1 136 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 MTMR14Q8NCE2 650 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 B3GALNT2Q8NCR0 500 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 NACC2Q96BF6 587 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 PDLIM5Q96HC4 596 aaKnown RBP13.21□□□□□ -0.29
SKA3-201ENST00000298260 FCRL5Q96RD9 977 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 SIRT5Q9NXA8 310 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 EVPLLA8MZ36 301 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 TSPAN1O60635 241 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 MAFKO60675 156 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 WISP3O95389 354 aaPredicted RBP13.21□□□□□ -0.3
SKA3-201ENST00000298260 CCR1P32246 355 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 ERVK-8P63133 956 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 FAM174BQ3ZCQ3 159 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 C9orf57Q5W0N0 161 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 NOXA1Q86UR1 476 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 GLCCI1Q86VQ1 547 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 FBXO16Q8IX29 292 aaPredicted RBP13.21□□□□□ -0.3
SKA3-201ENST00000298260 SVOPLQ8N434 492 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 TTC39CQ8N584 583 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 AMER2Q8N7J2 671 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 SLC43A3Q8NBI5 491 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 FBLIM1Q8WUP2 373 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 APH1BQ8WW43 257 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 VAT1Q99536 393 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 BRINP2Q9C0B6 783 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 NXF3Q9H4D5 531 aaKnown RBP13.21□□□□□ -0.3
SKA3-201ENST00000298260 NT5MQ9NPB1 228 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 ARL5AQ9Y689 179 aa13.21□□□□□ -0.3
SKA3-201ENST00000298260 ELOVL7A1L3X0 281 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 CLDN24A6NM45 220 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 ANXA9O76027 345 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 JUNDP17535 347 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 RPS12P25398 132 aaKnown RBP13.2□□□□□ -0.3
SKA3-201ENST00000298260 POU6F2P78424 691 aaPredicted RBP13.2□□□□□ -0.3
SKA3-201ENST00000298260 HOXC5Q00444 222 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 TNFAIP1Q13829 316 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 NR6A1Q15406 480 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 CPZQ66K79 652 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 IL27RAQ6UWB1 636 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 SPATA19Q7Z5L4 167 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 CCDC28AQ8IWP9 274 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 ZNF566Q969W8 418 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 ZNF599Q96NL3 588 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 COPS4Q9BT78 406 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 DUSP16Q9BY84 665 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 PDGFCQ9NRA1 345 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 PDP1Q9P0J1 537 aaPredicted RBP13.2□□□□□ -0.3
SKA3-201ENST00000298260 RABL2AQ9UBK7 228 aaPredicted RBP13.2□□□□□ -0.3
SKA3-201ENST00000298260 KCNH4Q9UQ05 1017 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 OR6C70A6NIJ9 312 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 A8MUA0 341 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 CREG1O75629 220 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 C22orf31O95567 290 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 MOCS2O96007 188 aaPredicted RBP13.2□□□□□ -0.3
SKA3-201ENST00000298260 CAPN1P07384 714 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 FAM189BP81408 668 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 ZNF45Q02386 682 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 SOX4Q06945 474 aaPredicted RBP13.2□□□□□ -0.3
SKA3-201ENST00000298260 SLC14A2Q15849 920 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 ARMC4Q5T2S8 1044 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 ANKS6Q68DC2 871 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 VTCN1Q7Z7D3 282 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 SIMC1Q8NDZ2 872 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 OR13C4Q8NGS5 318 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 PCNPQ8WW12 178 aaKnown RBP13.2□□□□□ -0.3
SKA3-201ENST00000298260 SMIM14Q96QK8 99 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 GDF15Q99988 308 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 TTPALQ9BTX7 342 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 GPR83Q9NYM4 423 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 PCDH10Q9P2E7 1040 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 ZMYM5Q9UJ78 669 aa13.2□□□□□ -0.3
SKA3-201ENST00000298260 LTBP3Q9NS15 1303 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms