RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 HGH1Q9BTY7 390 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 XKR8Q9H6D3 395 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 IL1RAPL1Q9NZN1 696 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 PILRAQ9UKJ1 303 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 PCDHB11Q9Y5F2 797 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 ZCWPW2A0A1B0GU75 182 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 UBA6A0AVT1 1052 aaPredicted RBP14.6□□□□□ -0.07
VPS39-210ENST00000568357 B8ZZF3 427 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 F8W8V4 182 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 K7ENP7 123 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 GPC4O75487 556 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 WISP1O95388 367 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 FOLR1P15328 257 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 WT1P19544 449 aaPredicted RBP14.6□□□□□ -0.07
VPS39-210ENST00000568357 RPS3P23396 243 aaKnown RBP eCLIP14.6□□□□□ -0.07
VPS39-210ENST00000568357 AOAHP28039 575 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 PLOD1Q02809 727 aaPredicted RBP14.6□□□□□ -0.07
VPS39-210ENST00000568357 PTK6Q13882 451 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 DHX34Q14147 1143 aaKnown RBP14.6□□□□□ -0.07
VPS39-210ENST00000568357 KCNAB1Q14722 419 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 SYTL3Q4VX76 610 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 CTSL3PQ5NE16 218 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 DNTTIP2Q5QJE6 756 aaKnown RBP14.6□□□□□ -0.07
VPS39-210ENST00000568357 PTRHD1Q6GMV3 140 aaKnown RBP14.6□□□□□ -0.07
VPS39-210ENST00000568357 MRNIPQ6NTE8 343 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 NEPROQ6NW34 567 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 ARMC6Q6NXE6 501 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 INO80CQ6PI98 192 aaPredicted RBP14.6□□□□□ -0.07
VPS39-210ENST00000568357 TIPARPQ7Z3E1 657 aaKnown RBP14.6□□□□□ -0.07
VPS39-210ENST00000568357 SDCCAG8Q86SQ7 713 aaPredicted RBP14.6□□□□□ -0.07
VPS39-210ENST00000568357 SLC22A15Q8IZD6 547 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 OTUD6BQ8N6M0 293 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 ASZ1Q8WWH4 475 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 ELMO2Q96JJ3 720 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 BIRC8Q96P09 236 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 CD180Q99467 661 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 ZPBPQ9BS86 351 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 KCND1Q9NSA2 647 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 SAMD15Q9P1V8 674 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 ASIC3Q9UHC3 531 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 ASF1AQ9Y294 204 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 RPS6KL1Q9Y6S9 549 aa14.6□□□□□ -0.07
VPS39-210ENST00000568357 PTPN13Q12923 2485 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 TLCD2A6NGC4 264 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 BTN3A1O00481 513 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 DNALI1O14645 258 aaPredicted RBP14.59□□□□□ -0.07
VPS39-210ENST00000568357 RAD1O60671 282 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 SLCO2B1O94956 709 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 F7P08709 466 aaPredicted RBP14.59□□□□□ -0.07
VPS39-210ENST00000568357 ZNF28P17035 718 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 PRDX3P30048 256 aaKnown RBP14.59□□□□□ -0.07
VPS39-210ENST00000568357 FMO4P31512 558 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 EIF3BP55884 814 aaKnown RBP14.59□□□□□ -0.07
VPS39-210ENST00000568357 ABRQ12979 859 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 IL11RAQ14626 422 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 TYSND1Q2T9J0 566 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 ZNF789Q5FWF6 425 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 MANEAQ5SRI9 462 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 CENPUQ71F23 418 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 AMIGO1Q86WK6 493 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 LRRC6Q86X45 466 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 TBC1D21Q8IYX1 336 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 ADGRF3Q8IZF5 1079 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 LPGAT1Q92604 370 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 ZNF669Q96BR6 464 aaPredicted RBP14.59□□□□□ -0.07
VPS39-210ENST00000568357 TCF12Q99081 682 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 TSSK1BQ9BXA7 367 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 TRIT1Q9H3H1 467 aaKnown RBP14.59□□□□□ -0.07
VPS39-210ENST00000568357 ICKQ9UPZ9 632 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 CRYL1Q9Y2S2 319 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 TMEM184BQ9Y519 407 aaPredicted RBP14.59□□□□□ -0.07
VPS39-210ENST00000568357 MAD1L1Q9Y6D9 718 aa14.59□□□□□ -0.07
VPS39-210ENST00000568357 SPTA1P02549 2419 aa14.58□□□□□ -0.07
VPS39-210ENST00000568357 SLC28A2O43868 658 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 STK17BO94768 372 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 S1PR4O95977 384 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 APOA4P06727 396 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 EBLN1P0CF75 366 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 FGF5P12034 268 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 PAMP19021 973 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 HSD11B2P80365 405 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 PRKAA1Q13131 559 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 MSS51Q4VC12 460 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 UNC5AQ6ZN44 842 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 KMT5CQ86Y97 462 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 CILP2Q8IUL8 1156 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 CACNA2D3Q8IZS8 1091 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 D2HGDHQ8N465 521 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 SIDT2Q8NBJ9 832 aaKnown RBP14.58□□□□□ -0.08
VPS39-210ENST00000568357 OR5K2Q8NHB8 316 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 GALPQ9UBC7 116 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 POLG2Q9UHN1 485 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 GNPTGQ9UJJ9 305 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 POMT2Q9UKY4 750 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 PLAGL1Q9UM63 463 aa14.58□□□□□ -0.08
VPS39-210ENST00000568357 TDRKHQ9Y2W6 561 aaKnown RBP14.58□□□□□ -0.08
VPS39-210ENST00000568357 AHCTF1Q8WYP5 2266 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 GSAPA4D1B5 854 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 SLC9B1P1A6NJY1 282 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 NIPSNAP2O75323 286 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms