RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SGSM3Q96HU1 749 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 TSSK1BQ9BXA7 367 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 SLC25A18Q9H1K4 315 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 STARD5Q9NSY2 213 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 POLG2Q9UHN1 485 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 TDRKHQ9Y2W6 561 aaKnown RBP20.12■□□□□ 0.81
CLN3-219ENST00000565778 SLC5A10A0PJK1 596 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 BHMG1C9JSJ3 638 aaPredicted RBP20.11■□□□□ 0.81
CLN3-219ENST00000565778 J3QKU1 62 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 SCRG1O75711 98 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 ACADLP28330 430 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 TERF1P54274 439 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 KCNAB2Q13303 367 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 SEMA3AQ14563 771 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 CRTC2Q53ET0 693 aaPredicted RBP20.11■□□□□ 0.81
CLN3-219ENST00000565778 AARS2Q5JTZ9 985 aaKnown RBP20.11■□□□□ 0.81
CLN3-219ENST00000565778 FAM199XQ6PEV8 388 aaPredicted RBP20.11■□□□□ 0.81
CLN3-219ENST00000565778 PRICKLE2Q7Z3G6 844 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 LDB1Q86U70 411 aaPredicted RBP20.11■□□□□ 0.81
CLN3-219ENST00000565778 ADGRF3Q8IZF5 1079 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 APOBEC4Q8WW27 367 aaKnown RBP20.11■□□□□ 0.81
CLN3-219ENST00000565778 IL22Q9GZX6 179 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 AKIRIN1Q9H9L7 192 aaPredicted RBP20.11■□□□□ 0.81
CLN3-219ENST00000565778 FANCEQ9HB96 536 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 CATSPERZQ9NTU4 200 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 ACTR10Q9NZ32 417 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 BTRCQ9Y297 605 aa20.11■□□□□ 0.81
CLN3-219ENST00000565778 PIPSLA2A3N6 862 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 CD3EAPO15446 510 aaKnown RBP20.1■□□□□ 0.81
CLN3-219ENST00000565778 SLC28A2O43868 658 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 ST6GAL1P15907 406 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 CCR7P32248 378 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 SHMT2P34897 504 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 NFKB2Q00653 900 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 HSPA14Q0VDF9 509 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 DNASE1L3Q13609 305 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 TRIP13Q15645 432 aaPredicted RBP20.1■□□□□ 0.81
CLN3-219ENST00000565778 KCTD19Q17RG1 926 aaPredicted RBP20.1■□□□□ 0.81
CLN3-219ENST00000565778 UNC5AQ6ZN44 842 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 PRELID2Q8N945 189 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 CT55Q8WUE5 264 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 CARD6Q9BX69 1037 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 KLHL25Q9H0H3 589 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 SERTAD3Q9UJW9 196 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 TTC7AQ9ULT0 858 aaPredicted RBP20.1■□□□□ 0.81
CLN3-219ENST00000565778 ICKQ9UPZ9 632 aa20.1■□□□□ 0.81
CLN3-219ENST00000565778 IQCF5A8MTL0 148 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 TERTO14746 1132 aaKnown RBP20.09■□□□□ 0.81
CLN3-219ENST00000565778 CPNE3O75131 537 aaKnown RBP20.09■□□□□ 0.81
CLN3-219ENST00000565778 CREG1O75629 220 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 KLK3P07288 261 aaPredicted RBP20.09■□□□□ 0.81
CLN3-219ENST00000565778 MGAT1P26572 445 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 NMBRP28336 390 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 TTPAP49638 278 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 CDK16Q00536 496 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 PTRHD1Q6GMV3 140 aaKnown RBP20.09■□□□□ 0.81
CLN3-219ENST00000565778 OR5K2Q8NHB8 316 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 MR1Q95460 341 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 TRAPPC9Q96Q05 1148 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 TWSG1Q9GZX9 223 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 SYTL2Q9HCH5 934 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 JRKLQ9Y4A0 524 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 PCDHGA6Q9Y5G7 932 aa20.09■□□□□ 0.81
CLN3-219ENST00000565778 C21orf140B9A014 251 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 PRMT5O14744 637 aaPredicted RBP20.08■□□□□ 0.81
CLN3-219ENST00000565778 KDM1AO60341 852 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 APOA4P06727 396 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 PVRP15151 417 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 VPS41P49754 854 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 RPS15P62841 145 aaKnown RBP20.08■□□□□ 0.81
CLN3-219ENST00000565778 SARNPP82979 210 aaKnown RBP20.08■□□□□ 0.81
CLN3-219ENST00000565778 ABRQ12979 859 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 PRAMEF17Q5VTA0 474 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 LRRC8BQ6P9F7 803 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 KRT222Q8N1A0 295 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 CFAP61Q8NHU2 1237 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 ASZ1Q8WWH4 475 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 CPT1BQ92523 772 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 MAGOHBQ96A72 148 aaKnown RBP20.08■□□□□ 0.81
CLN3-219ENST00000565778 CLIP3Q96DZ5 547 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 PBKQ96KB5 322 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 AP1M1Q9BXS5 423 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 GPR87Q9BY21 358 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 PITPNM3Q9BZ71 974 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 LATS2Q9NRM7 1088 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 MARCH4Q9P2E8 410 aaPredicted RBP20.08■□□□□ 0.81
CLN3-219ENST00000565778 TUBD1Q9UJT1 453 aa20.08■□□□□ 0.81
CLN3-219ENST00000565778 CFAP46Q8IYW2 2715 aa20.08■□□□□ 0.8
CLN3-219ENST00000565778 CDC14CA4D256 554 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 TMEM150CB9EJG8 249 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 NDUFS3O75489 264 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 FURINP09958 794 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 TPSB2P20231 275 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 CYP2A7P20853 494 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 GPS1Q13098 491 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 TPSAB1Q15661 275 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 DNAJC21Q5F1R6 531 aaKnown RBP20.07■□□□□ 0.8
CLN3-219ENST00000565778 SPESP1Q6UW49 350 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 CES3Q6UWW8 571 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 OTUD6BQ8N6M0 293 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms