RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 CENPTQ96BT3 561 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 MTERF3Q96E29 417 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 TXNDC15Q96J42 360 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 KLHL5Q96PQ7 755 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 GAL3ST4Q96RP7 486 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 MTERF1Q99551 399 aaKnown RBP3.03□□□□□ -1.92
TRAV28-201ENST00000557548 LMF2Q9BU23 707 aaKnown RBP3.03□□□□□ -1.92
TRAV28-201ENST00000557548 KRT23Q9C075 422 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 SRD5A3Q9H8P0 318 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 Q9N2K0 584 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 FZD3Q9NPG1 666 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 ADARB2Q9NS39 739 aaKnown RBP3.03□□□□□ -1.92
TRAV28-201ENST00000557548 TMEM161AQ9NX61 479 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 CYP39A1Q9NYL5 469 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 NPAP1Q9NZP6 1156 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 EPS15L1Q9UBC2 864 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 HOOK1Q9UJC3 728 aaKnown RBP3.03□□□□□ -1.92
TRAV28-201ENST00000557548 FBXL5Q9UKA1 691 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 CHKBQ9Y259 395 aa3.03□□□□□ -1.92
TRAV28-201ENST00000557548 ATXN2Q99700 1313 aaKnown RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 RNF103-CHMP3A0A140T963 221 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 A0A1W2PPW3 197 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 MAGEA13PA6NCF6 341 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 C5orf51A6NDU8 294 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 SDR42E2A6NKP2 422 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 DUXAA6NLW8 204 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 BECN2A8MW95 431 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 RNF103O00237 685 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 TXNL1O43396 289 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 CRCPO75575 148 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 SOX30O94993 753 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 EPN2O95208 641 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 CH25HO95992 272 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 CYP1A2P05177 515 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 CSN3P07498 182 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 SBK2P0C263 348 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 LMO1P25800 156 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 KIF5BP33176 963 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 RGS7P49802 495 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 MXI1P50539 228 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 ZNF81P51508 661 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 MTCP1P56278 107 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 DLK1P80370 383 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 GFPT1Q06210 699 aaPredicted RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 PNRC1Q12796 327 aaPredicted RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 CUL3Q13618 768 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 CTU2Q2VPK5 515 aaKnown RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 FUT11Q495W5 492 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 Q4G0T1 1027 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 AARDQ4LEZ3 155 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 IFI44LQ53G44 452 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 RAB6CQ53S08 254 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 ZNF789Q5FWF6 425 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 PRAMEF8Q5VWM4 474 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 NOTUMQ6P988 496 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 CYB5D1Q6P9G0 228 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 CRIP3Q6Q6R5 217 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 ZNF517Q6ZMY9 492 aaPredicted RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 Q75L30 129 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 BHLHA9Q7RTU4 235 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 DGLUCYQ7Z3D6 616 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 ARHGAP22Q7Z5H3 698 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 NRARPQ7Z6K4 114 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 YTHDF3Q7Z739 585 aaKnown RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 LCA5Q86VQ0 697 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 ADGRG3Q86Y34 549 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 MAP7D3Q8IWC1 876 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 CHERPQ8IWX8 916 aaKnown RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 ARL6IP6Q8N6S5 226 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 NEXN-AS1Q8NBZ9 246 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 FAM98AQ8NCA5 519 aaKnown RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 ANKRD20A12PQ8NF67 263 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 B4GALNT2Q8NHY0 566 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 NCOA7Q8NI08 942 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 VANGL1Q8TAA9 524 aaPredicted RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 RNASE8Q8TDE3 154 aaKnown RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 WFIKKN2Q8TEU8 576 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 SSMEM1Q8WWF3 244 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 SEMA4DQ92854 862 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 SPATA13Q96N96 652 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 QRFPRQ96P65 431 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 RUFY1Q96T51 708 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 CSF3RQ99062 836 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 MMTAG2Q9BU76 263 aaKnown RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 LSG1Q9H089 658 aaKnown RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 RAB6CQ9H0N0 254 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 P2RY12Q9H244 342 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 AKIRIN1Q9H9L7 192 aaPredicted RBP3.02□□□□□ -1.93
TRAV28-201ENST00000557548 RNPEPL1Q9HAU8 725 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 CDH20Q9HBT6 801 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 DNAJC4Q9NNZ3 241 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 RAB9BQ9NP90 201 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 DNAJC11Q9NVH1 559 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 MIOSQ9NXC5 875 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 NINJ2Q9NZG7 142 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 KLHL9Q9P2J3 617 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 GMEB2Q9UKD1 530 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 TRIM17Q9Y577 477 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 NME7Q9Y5B8 376 aa3.02□□□□□ -1.93
TRAV28-201ENST00000557548 HS3ST3A1Q9Y663 406 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms