RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 DESI2Q9BSY9 194 aa16.31■□□□□ 0.2
CPSF1-207ENST00000531727 XKR8Q9H6D3 395 aa16.31■□□□□ 0.2
CPSF1-207ENST00000531727 ACTR5Q9H9F9 607 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-207ENST00000531727 PCMTD2Q9NV79 361 aa16.31■□□□□ 0.2
CPSF1-207ENST00000531727 ACTR10Q9NZ32 417 aa16.31■□□□□ 0.2
CPSF1-207ENST00000531727 ICKQ9UPZ9 632 aa16.31■□□□□ 0.2
CPSF1-207ENST00000531727 PIKFYVEQ9Y2I7 2098 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 OR51F1A6NGY5 319 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 CYSRT1A8MQ03 144 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 FTH1P02794 183 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 PVRP15151 417 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 FOXN2P32314 431 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 LMAN1P49257 510 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 ENDOVQ8N8Q3 282 aaKnown RBP16.3■□□□□ 0.2
CPSF1-207ENST00000531727 OR52K1Q8NGK4 314 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 OR5AR1Q8NGP9 310 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 ADAMTS17Q8TE56 1095 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 ELMO1Q92556 727 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 COL26A1Q96A83 441 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 MIB2Q96AX9 1013 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 NLNQ9BYT8 704 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 SERTAD3Q9UJW9 196 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 SNX7Q9UNH6 387 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 PLAAQ9Y263 795 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 PRSS21Q9Y6M0 314 aa16.3■□□□□ 0.2
CPSF1-207ENST00000531727 CCDC162PA2VCL2 907 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 ARGFXA6NJG6 315 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 ERI2A8K979 691 aaKnown RBP16.29■□□□□ 0.2
CPSF1-207ENST00000531727 SHMT2P34897 504 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 ITGA1P56199 1179 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 CDH17Q12864 832 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 CHAF1BQ13112 559 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 UBAP2LQ14157 1087 aaKnown RBP16.29■□□□□ 0.2
CPSF1-207ENST00000531727 CCDC38Q502W7 563 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 SPESP1Q6UW49 350 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 FAM198BQ6UWH4 519 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 CDHR3Q6ZTQ4 885 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 SYTL1Q8IYJ3 562 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 DNAAF3Q8N9W5 541 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 ATG4AQ8WYN0 398 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 SLC25A23Q9BV35 468 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 KLHL25Q9H0H3 589 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 ING2Q9H160 280 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 ACSS2Q9NR19 701 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 TCFL5Q9UL49 500 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 ASF1AQ9Y294 204 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 PCDHGA9Q9Y5G4 932 aaKnown RBP16.29■□□□□ 0.2
CPSF1-207ENST00000531727 CAPN6Q9Y6Q1 641 aa16.29■□□□□ 0.2
CPSF1-207ENST00000531727 TNRC6AQ8NDV7 1962 aaKnown RBP16.28■□□□□ 0.2
CPSF1-207ENST00000531727 SLC5A10A0PJK1 596 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 CLEC18AA5D8T8 446 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 E7EQ34 232 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 SUN1O94901 812 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 GAS8O95995 478 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 CAPN1P07384 714 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 OR56A5P0C7T3 313 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 ACADLP28330 430 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 STIP1P31948 543 aaKnown RBP16.28■□□□□ 0.2
CPSF1-207ENST00000531727 FDFT1P37268 417 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 PTGIRP43119 386 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 CD97P48960 835 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 CCL11P51671 97 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 PGDP52209 483 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 MLLT10P55197 1068 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 BRD3Q15059 726 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 OASLQ15646 514 aaKnown RBP16.28■□□□□ 0.2
CPSF1-207ENST00000531727 SYTL3Q4VX76 610 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 LYPLAL1Q5VWZ2 237 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 CLEC18BQ6UXF7 455 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 UNC5AQ6ZN44 842 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 HOOK3Q86VS8 718 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 TBC1D21Q8IYX1 336 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 C19orf47Q8N9M1 422 aaKnown RBP16.28■□□□□ 0.2
CPSF1-207ENST00000531727 CLEC18CQ8NCF0 446 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 OR13J1Q8NGT2 312 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.28■□□□□ 0.2
CPSF1-207ENST00000531727 DPH2Q9BQC3 489 aaPredicted RBP16.28■□□□□ 0.2
CPSF1-207ENST00000531727 FRMD8P1Q9BZ68 369 aaPredicted RBP16.28■□□□□ 0.2
CPSF1-207ENST00000531727 SLC7A5P2Q9GIP4 190 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 MLXIPLQ9NP71 852 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 POLG2Q9UHN1 485 aa16.28■□□□□ 0.2
CPSF1-207ENST00000531727 COL12A1Q99715 3063 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 RELNP78509 3460 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 HEATR9A2RTY3 570 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 ZNF749O43361 778 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 LIASO43766 372 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 HBQ1P09105 142 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 UGT2B7P16662 529 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 PLOD1Q02809 727 aaPredicted RBP16.27■□□□□ 0.2
CPSF1-207ENST00000531727 PTCHD3Q3KNS1 767 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 TSTD2Q5T7W7 516 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 SEL1L2Q5TEA6 688 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 AFTPHQ6ULP2 937 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 NAPRTQ6XQN6 538 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 RNF10Q8N5U6 811 aaKnown RBP16.27■□□□□ 0.2
CPSF1-207ENST00000531727 OR5K2Q8NHB8 316 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 HDAC10Q969S8 669 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 TCTN2Q96GX1 697 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 OR2A14Q96R47 310 aa16.27■□□□□ 0.2
CPSF1-207ENST00000531727 RANBP9Q96S59 729 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms