RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 FAM167BQ9BTA0 163 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 TSSK1BQ9BXA7 367 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 FAM129AQ9BZQ8 928 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 PHACTR1Q9C0D0 580 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 ADNPQ9H2P0 1102 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 GPN2Q9H9Y4 310 aaPredicted RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 SARS2Q9NP81 518 aaKnown RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 FAM114A2Q9NRY5 505 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 C20orf96Q9NUD7 363 aaPredicted RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 MARCH4Q9P2E8 410 aaPredicted RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 TBC1D29Q9UFV1 150 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 SLC23A2Q9UGH3 650 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 ZC3H7BQ9UGR2 993 aaKnown RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 FAM169AQ9Y6X4 670 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 PTPN13Q12923 2485 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 KIR2DS5A0A0G2JLQ3 304 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 A0A0G2JNG1 304 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 C17orf113A0A1B0GUU1 675 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 ESYT3A0FGR9 886 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 A6NCN8 305 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 GOLGA8KD6RF30 607 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 GOLGA8TH3BQL2 631 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 KIR2DS3K7RE56 304 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 PRMT5O14744 637 aaPredicted RBP9.9□□□□□ -0.82
VPS28-204ENST00000526054 TP73O15350 636 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 SLU7O95391 586 aaKnown RBP9.9□□□□□ -0.82
VPS28-204ENST00000526054 F3P13726 295 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 RPS3P23396 243 aaKnown RBP eCLIP9.9□□□□□ -0.825e-7■■□□□ 13
VPS28-204ENST00000526054 HALP42357 657 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 CCR10P46092 362 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 CBLBQ13191 982 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 KCNAB2Q13303 367 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 KIR2DS5Q14953 304 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 SEPT7Q16181 437 aaKnown RBP9.9□□□□□ -0.82
VPS28-204ENST00000526054 TYSND1Q2T9J0 566 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 AGAP9Q5VTM2 703 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 ZNF470Q6ECI4 717 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 ZNF449Q6P9G9 518 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 CEACAM20Q6UY09 585 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 CEP128Q6ZU80 1094 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 LDB1Q86U70 411 aaPredicted RBP9.9□□□□□ -0.82
VPS28-204ENST00000526054 KCNMB4Q86W47 210 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 ANKMY2Q8IV38 441 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 ZBED8Q8IZ13 594 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 NLGN4XQ8N0W4 816 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 CLDN19Q8N6F1 224 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 FBXO36Q8NEA4 188 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 NLGN4YQ8NFZ3 816 aaPredicted RBP9.9□□□□□ -0.82
VPS28-204ENST00000526054 OR2L2Q8NH16 312 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 FBXO25Q8TCJ0 367 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 SEC14L1Q92503 715 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 NCSTNQ92542 709 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 CCM2Q9BSQ5 444 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.9□□□□□ -0.82
VPS28-204ENST00000526054 SAYSD1Q9NPB0 183 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 INTS10Q9NVR2 710 aaKnown RBP9.9□□□□□ -0.82
VPS28-204ENST00000526054 PDP2Q9P2J9 529 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 MTRF1LQ9UGC7 380 aaKnown RBP9.9□□□□□ -0.82
VPS28-204ENST00000526054 KLHL3Q9UH77 587 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 GNPTGQ9UJJ9 305 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 PILRAQ9UKJ1 303 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 TEX264Q9Y6I9 313 aa9.9□□□□□ -0.82
VPS28-204ENST00000526054 UBA6A0AVT1 1052 aaPredicted RBP9.89□□□□□ -0.83
VPS28-204ENST00000526054 PRR19A6NJB7 356 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 CAPN5O15484 640 aaPredicted RBP9.89□□□□□ -0.83
VPS28-204ENST00000526054 SGTAO43765 313 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 OR1I1O60431 355 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 SLC35G4P0C7Q5 338 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 PRKAR1AP10644 381 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 EIF3BP55884 814 aaKnown RBP9.89□□□□□ -0.83
VPS28-204ENST00000526054 MC2RQ01718 297 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 TLE1Q04724 770 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 CDC20Q12834 499 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 NFE2L1Q14494 772 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 SYTL3Q4VX76 610 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 HP1BP3Q5SSJ5 553 aaPredicted RBP9.89□□□□□ -0.83
VPS28-204ENST00000526054 STEAP4Q687X5 459 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 PTRHD1Q6GMV3 140 aaKnown RBP9.89□□□□□ -0.83
VPS28-204ENST00000526054 IYDQ6PHW0 289 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 ZDHHC24Q6UX98 284 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 WASH2PQ6VEQ5 465 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 UNC5AQ6ZN44 842 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 ARHGAP22Q7Z5H3 698 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 CCDC25Q86WR0 208 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 CILP2Q8IUL8 1156 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 IGDCC3Q8IVU1 814 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 TRIM48Q8IWZ4 208 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 PYROXD1Q8WU10 500 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 NAT14Q8WUY8 206 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 ELMO1Q92556 727 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 CERS2Q96G23 380 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 SLC45A3Q96JT2 553 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 CATSPER2Q96P56 530 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 PANX3Q96QZ0 392 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 ZPBPQ9BS86 351 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 EFHD1Q9BUP0 239 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 EPB41L1Q9H4G0 881 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 COG4Q9H9E3 785 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 WASH6PQ9NQA3 447 aa9.89□□□□□ -0.83
VPS28-204ENST00000526054 PRDM8Q9NQV8 689 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms