RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 MAP3K3Q99759 626 aa9.43□□□□□ -0.9
RNF4-221ENST00000513643 EBNA1BP2Q99848 306 aaKnown RBP9.43□□□□□ -0.9
RNF4-221ENST00000513643 INTS10Q9NVR2 710 aaKnown RBP9.43□□□□□ -0.9
RNF4-221ENST00000513643 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.43□□□□□ -0.9
RNF4-221ENST00000513643 KLHL42Q9P2K6 505 aa9.43□□□□□ -0.9
RNF4-221ENST00000513643 FAM8A1Q9UBU6 413 aa9.43□□□□□ -0.9
RNF4-221ENST00000513643 POLG2Q9UHN1 485 aa9.43□□□□□ -0.9
RNF4-221ENST00000513643 ANAPC5Q9UJX4 755 aa9.43□□□□□ -0.9
RNF4-221ENST00000513643 LHX6Q9UPM6 363 aa9.43□□□□□ -0.9
RNF4-221ENST00000513643 ICKQ9UPZ9 632 aa9.43□□□□□ -0.9
RNF4-221ENST00000513643 BTRCQ9Y297 605 aa9.43□□□□□ -0.9
RNF4-221ENST00000513643 RPS6KL1Q9Y6S9 549 aa9.43□□□□□ -0.9
RNF4-221ENST00000513643 H3BMH7 237 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 H3BMM5 538 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 STMND1H3BQB6 276 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 MATN2O00339 956 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 BTN3A1O00481 513 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 TERTO14746 1132 aaKnown RBP9.42□□□□□ -0.9
RNF4-221ENST00000513643 KPNA5O15131 536 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 TTI1O43156 1089 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 PRICKLE3O43900 615 aaPredicted RBP9.42□□□□□ -0.9
RNF4-221ENST00000513643 NDUFS3O75489 264 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 MATN4O95460 622 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 FOLR1P15328 257 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 PGAM1P18669 254 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 PAMP19021 973 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 WT1P19544 449 aaPredicted RBP9.42□□□□□ -0.9
RNF4-221ENST00000513643 GABRB3P28472 473 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 PRDX3P30048 256 aaKnown RBP9.42□□□□□ -0.9
RNF4-221ENST00000513643 ATP5DP30049 168 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 PAFAH1B1P43034 410 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 CLCN7P51798 805 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 TERF1P54274 439 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 TIAL1Q01085 375 aaKnown RBP eCLIP9.42□□□□□ -0.9
RNF4-221ENST00000513643 DHX9Q08211 1270 aaKnown RBP9.42□□□□□ -0.9
RNF4-221ENST00000513643 MAP7Q14244 749 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 KYNUQ16719 465 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 LONRF1Q17RB8 773 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.42□□□□□ -0.9
RNF4-221ENST00000513643 IZUMO3Q5VZ72 239 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 STEAP4Q687X5 459 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 IRGCQ6NXR0 463 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 ZNF449Q6P9G9 518 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 PCSK4Q6UW60 755 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 UNC5DQ6UXZ4 953 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 CEACAM20Q6UY09 585 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 UNC5AQ6ZN44 842 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 FAM92BQ6ZTR7 304 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 GALNT7Q86SF2 657 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 BPHLQ86WA6 291 aaPredicted RBP9.42□□□□□ -0.9
RNF4-221ENST00000513643 AMIGO1Q86WK6 493 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 OOSP2Q86WS3 158 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 DENND6AQ8IWF6 608 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 KLHL7Q8IXQ5 586 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 LCN9Q8WX39 176 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 ZNF669Q96BR6 464 aaPredicted RBP9.42□□□□□ -0.9
RNF4-221ENST00000513643 LRRC39Q96DD0 335 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 STAMBPL1Q96FJ0 436 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 NAF1Q96HR8 494 aaKnown RBP9.42□□□□□ -0.9
RNF4-221ENST00000513643 PPM1MQ96MI6 270 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 PANX3Q96QZ0 392 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 OR2A14Q96R47 310 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 CCNL2Q96S94 520 aaPredicted RBP9.42□□□□□ -0.9
RNF4-221ENST00000513643 NAT9Q9BTE0 207 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 SRMSQ9H3Y6 488 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 ENAMQ9NRM1 1142 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 C1GALT1Q9NS00 363 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 IL1RAPL1Q9NZN1 696 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 OR6C2Q9NZP2 312 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 SAMD15Q9P1V8 674 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 GALPQ9UBC7 116 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 KLHL3Q9UH77 587 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 ASIC3Q9UHC3 531 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 GNPTGQ9UJJ9 305 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 ASF1AQ9Y294 204 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 TEX264Q9Y6I9 313 aa9.42□□□□□ -0.9
RNF4-221ENST00000513643 AGRPO00253 132 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 POLR1CO15160 346 aaPredicted RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 ZBTB11O95625 1053 aaPredicted RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 TTC4O95801 387 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 APOA4P06727 396 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 PKMP14618 531 aaKnown RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 ITGB6P18564 788 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 POLR2CP19387 275 aaPredicted RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 CD9P21926 228 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 PEBP1P30086 187 aaKnown RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 FMO4P31512 558 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 RPL21P46778 160 aaKnown RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 GABRA4P48169 554 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 SEPHS1P49903 392 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 ITGA8P53708 1063 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 TMPRSS3P57727 454 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 HSD11B2P80365 405 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 VAC14Q08AM6 782 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 HSPA14Q0VDF9 509 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 PRKG2Q13237 762 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 SRSF6Q13247 344 aaKnown RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 CTBP1Q13363 440 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 CRYMQ14894 314 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 BRD3Q15059 726 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms