RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 SIX1Q15475 284 aaPredicted RBP11.29□□□□□ -0.6
VTI1A-208ENST00000494728 ZIC1Q15915 447 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 DEFB110Q30KQ9 67 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 P3H1Q32P28 736 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 PLEKHS1Q5SXH7 462 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 CDHR3Q6ZTQ4 885 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 ZNF534Q76KX8 674 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 TMEM151BQ8IW70 566 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 SYCE1Q8N0S2 351 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 LMNTD1Q8N9Z9 388 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 TTC13Q8NBP0 860 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 FLVCR1-AS1Q8TAF5 88 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 STYXQ8WUJ0 223 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 ZFPM2Q8WW38 1151 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 C1orf54Q8WWF1 131 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 MR1Q95460 341 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 FCRL4Q96PJ5 515 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 PPP1R2P1Q96PQ5 205 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 TRAPPC9Q96Q05 1148 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 SRMSQ9H3Y6 488 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 ETNK1Q9HBU6 452 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 FAM60AQ9NP50 221 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 C1GALT1Q9NS00 363 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 PCMTD2Q9NV79 361 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 SPHK1Q9NYA1 384 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 SMARCAL1Q9NZC9 954 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 PLAGL1Q9UM63 463 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 MAN2B2Q9Y2E5 1009 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 PCDHB3Q9Y5E6 796 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 COLEC10Q9Y6Z7 277 aa11.29□□□□□ -0.6
VTI1A-208ENST00000494728 HEATR5BQ9P2D3 2071 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 TMEM150CB9EJG8 249 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 BHMG1C9JSJ3 638 aaPredicted RBP11.28□□□□□ -0.6
VTI1A-208ENST00000494728 H3BMH7 237 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 ARHGAP6O43182 974 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 RFPL1O75677 317 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 PTPN4P29074 926 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 CDC25BP30305 580 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 FOXL2P58012 376 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 KRT33BQ14525 404 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 UGT8Q16880 541 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 PTCHD3Q3KNS1 767 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 ZNF385CQ66K41 422 aaPredicted RBP11.28□□□□□ -0.6
VTI1A-208ENST00000494728 ARMC6Q6NXE6 501 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 PACS1Q6VY07 963 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 VRK3Q8IV63 474 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 DSELQ8IZU8 1212 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 CARFQ8N187 725 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 ENDOVQ8N8Q3 282 aaKnown RBP11.28□□□□□ -0.6
VTI1A-208ENST00000494728 ADAMTS17Q8TE56 1095 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 HEXDCQ8WVB3 486 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 TFGQ92734 400 aaPredicted RBP11.28□□□□□ -0.6
VTI1A-208ENST00000494728 TFB2MQ9H5Q4 396 aaKnown RBP11.28□□□□□ -0.6
VTI1A-208ENST00000494728 LATS2Q9NRM7 1088 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 KCND1Q9NSA2 647 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 ACTR10Q9NZ32 417 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 CIDEBQ9UHD4 219 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 ANAPC2Q9UJX6 822 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 PLAAQ9Y263 795 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 HEBP2Q9Y5Z4 205 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 DOPEY1Q5JWR5 2465 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 ITPR2Q14571 2701 aa11.28□□□□□ -0.6
VTI1A-208ENST00000494728 MDC1Q14676 2089 aaKnown RBP11.28□□□□□ -0.6
VTI1A-208ENST00000494728 SLC5A10A0PJK1 596 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 IFRD1O00458 451 aaPredicted RBP11.27□□□□□ -0.61
VTI1A-208ENST00000494728 SUN1O94901 812 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 GOT2P00505 430 aaKnown RBP11.27□□□□□ -0.61
VTI1A-208ENST00000494728 IFNB1P01574 187 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 ZSCAN5DPP0CG00 497 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 UGT2B7P16662 529 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 NSG1P42857 185 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 PTGIRP43119 386 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 GABRA4P48169 554 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 CD151P48509 253 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 CSE1LP55060 971 aaKnown RBP11.27□□□□□ -0.61
VTI1A-208ENST00000494728 ACVR1Q04771 509 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 SRSF1Q07955 248 aaKnown RBP eCLIP11.27□□□□□ -0.61
VTI1A-208ENST00000494728 CDH17Q12864 832 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 PRKAA1Q13131 559 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 RPA4Q13156 261 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 SEMA5AQ13591 1074 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 SNX1Q13596 522 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 ITIH4Q14624 930 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 CYB5D1Q6P9G0 228 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 SPESP1Q6UW49 350 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 LDB1Q86U70 411 aaPredicted RBP11.27□□□□□ -0.61
VTI1A-208ENST00000494728 BPHLQ86WA6 291 aaPredicted RBP11.27□□□□□ -0.61
VTI1A-208ENST00000494728 AMIGO1Q86WK6 493 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 SLC13A5Q86YT5 568 aaPredicted RBP11.27□□□□□ -0.61
VTI1A-208ENST00000494728 APLFQ8IW19 511 aaPredicted RBP11.27□□□□□ -0.61
VTI1A-208ENST00000494728 FAM20CQ8IXL6 584 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 SYTL1Q8IYJ3 562 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 ELMO1Q92556 727 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 HDAC10Q969S8 669 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 MENTQ9BUN1 341 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 MVB12BQ9H7P6 319 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 CASS4Q9NQ75 786 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 MARCH4Q9P2E8 410 aaPredicted RBP11.27□□□□□ -0.61
VTI1A-208ENST00000494728 IMPACTQ9P2X3 320 aa11.27□□□□□ -0.61
VTI1A-208ENST00000494728 CDYLQ9Y232 598 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms