RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 CCDC110Q8TBZ0 833 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 SNRNP40Q96DI7 357 aaKnown RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 BICD1Q96G01 975 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 SIGLEC11Q96RL6 698 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 TSPAN18Q96SJ8 248 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 C1QTNF3Q9BXJ4 246 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 TSPY26PQ9H489 355 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 C17orf75Q9HAS0 396 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 CDH20Q9HBT6 801 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 PRMT8Q9NR22 394 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 SLCO1C1Q9NYB5 712 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 SPASTQ9UBP0 616 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 GAGE2DQ9UEU5 116 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 XPO7Q9UIA9 1087 aaKnown RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 HBS1LQ9Y450 684 aaKnown RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 RAI2Q9Y5P3 530 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 ELOVL7A1L3X0 281 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 SOCS6O14544 535 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 PRAF2O60831 178 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 CSN3P07498 182 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 ADRB1P08588 477 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 SMIM18P0DKX4 95 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 CYP19A1P11511 503 aaPredicted RBP4.49□□□□□ -1.69
VPS13A-212ENST00000493341 MYL6BP14649 208 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 NPBWR1P48145 328 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 CTSCP53634 463 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 GSDMDP57764 484 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 SLC26A5P58743 744 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 SELENOVP59797 346 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 INPP5JQ15735 1006 aaPredicted RBP4.49□□□□□ -1.69
VPS13A-212ENST00000493341 INAQ16352 499 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 FAM174BQ3ZCQ3 159 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 PPP6R3Q5H9R7 873 aaPredicted RBP4.49□□□□□ -1.69
VPS13A-212ENST00000493341 Q5PR19 223 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 PAPPA-AS1Q5QFB9 102 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 SPRED1Q7Z699 444 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 PHLDB2Q86SQ0 1253 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 CNGA4Q8IV77 575 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 C1orf52Q8N6N3 182 aaKnown RBP4.49□□□□□ -1.69
VPS13A-212ENST00000493341 OR52E1Q8NGJ3 308 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 EXOC6Q8TAG9 804 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 KIAA1524Q8TCG1 905 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 PPP4R1Q8TF05 950 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 N4BP2L2Q92802 583 aaPredicted RBP4.49□□□□□ -1.69
VPS13A-212ENST00000493341 EEF2KMTQ96G04 330 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 RBM18Q96H35 190 aaKnown RBP4.49□□□□□ -1.69
VPS13A-212ENST00000493341 LRFN5Q96NI6 719 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 PKP2Q99959 881 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 TEX13BQ9BXU2 312 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 TXNDC16Q9P2K2 825 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 PACSIN3Q9UKS6 424 aa4.49□□□□□ -1.69
VPS13A-212ENST00000493341 hDV102S1A0JD36 115 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 OR2M5A3KFT3 312 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 I6L893 689 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 FLRT2O43155 660 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 TLX3O43711 291 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 NARSO43776 548 aaKnown RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 ATP9AO75110 1047 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 ATG13O75143 517 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 DDNO94850 711 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 GSRP00390 522 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 MT-ATP6P00846 226 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 IGHV2-70P01814 119 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 SAGP10523 405 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 GNLYP22749 145 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 HSD17B3P37058 310 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 MAGEB1P43366 347 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 PSMC4P43686 418 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 PTH2RP49190 550 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 MFAP3P55082 362 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 HMGN5P82970 282 aaKnown RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 CUL3Q13618 768 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 VEZF1Q14119 521 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 CTU2Q2VPK5 515 aaKnown RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 CEP78Q5JTW2 689 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 STRIP1Q5VSL9 837 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 LRRC38Q5VT99 294 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 RGMBQ6NW40 437 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 ZNF367Q7RTV3 350 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 PRSS42Q7Z5A4 293 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 ZNF410Q86VK4 478 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 TBC1D21Q8IYX1 336 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 BATF2Q8N1L9 274 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 OR5R1Q8NH85 324 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 SSMEM1Q8WWF3 244 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 SMPDL3BQ92485 455 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 SEMA4DQ92854 862 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 CDKN2AIPNLQ96HQ2 116 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 VPS39Q96JC1 886 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 MTERF1Q99551 399 aaKnown RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 ZNF559Q9BR84 538 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 NYXQ9GZU5 481 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 DPH5Q9H2P9 285 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.48□□□□□ -1.693e-7■■□□□ 13.7
VPS13A-212ENST00000493341 GPR132Q9UNW8 380 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 DHX29Q7Z478 1369 aaKnown RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 GAGE12JA6NER3 117 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 NPIPB8E9PQR5 432 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 OR10H2O60403 315 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 RAD51DO75771 328 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms