RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MZB1Q8WU39 189 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 KIAA1191Q96A73 305 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 PAIP2Q9BPZ3 127 aaKnown RBP9.86□□□□□ -0.83
CD44-207ENST00000425428 ZMYND15Q9H091 742 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 OR52A5Q9H2C5 316 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 ALG9Q9H6U8 611 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 TMEM9BQ9NQ34 198 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 PRDM8Q9NQV8 689 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 POT1Q9NUX5 634 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 ARL15Q9NXU5 204 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 NLGN3Q9NZ94 848 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 GALPQ9UBC7 116 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 GULP1Q9UBP9 304 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 PCOLCE2Q9UKZ9 415 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 CACNA1HO95180 2353 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 NPEPPSL1A6NEC2 478 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 RHPN2P1A8MT19 583 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 PATE3B3GLJ2 98 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 PRPF4O43172 522 aaKnown RBP eCLIP9.86□□□□□ -0.83
CD44-207ENST00000425428 KERAO60938 352 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 MYL2P10916 166 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 MTHFD1P11586 935 aaKnown RBP9.86□□□□□ -0.83
CD44-207ENST00000425428 PDHA2P29803 388 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 HNMTP50135 292 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 IRF9Q00978 393 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 IL9RQ01113 521 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 SPEM2Q0P670 501 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 SLC14A1Q13336 389 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 CCDC6Q16204 474 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 CSRP2Q16527 193 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 DEFB133Q30KQ1 61 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 PLA2G2CQ5R387 149 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 N4BP2L1Q5TBK1 243 aaPredicted RBP9.86□□□□□ -0.83
CD44-207ENST00000425428 ARMC6Q6NXE6 501 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 ZCCHC8Q6NZY4 707 aaKnown RBP9.86□□□□□ -0.83
CD44-207ENST00000425428 FAM83HQ6ZRV2 1179 aaPredicted RBP9.86□□□□□ -0.83
CD44-207ENST00000425428 MTERF4Q7Z6M4 381 aaKnown RBP9.86□□□□□ -0.83
CD44-207ENST00000425428 TRIM42Q8IWZ5 723 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 BANPQ8N9N5 519 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 OR5K2Q8NHB8 316 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 GIMAP7Q8NHV1 300 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 ASB11Q8WXH4 323 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 EXT2Q93063 718 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 CCDC138Q96M89 665 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 SLC30A3Q99726 388 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 SLC12A9Q9BXP2 914 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 TCEAL2Q9H3H9 227 aaPredicted RBP9.86□□□□□ -0.83
CD44-207ENST00000425428 SIRPGQ9P1W8 387 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 TBC1D29Q9UFV1 150 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 KLF15Q9UIH9 416 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 MED16Q9Y2X0 877 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 PLEKHM1Q9Y4G2 1056 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 OARD1Q9Y530 152 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 PCDHGB2Q9Y5G2 931 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 TNPO3Q9Y5L0 923 aaKnown RBP9.86□□□□□ -0.83
CD44-207ENST00000425428 PCM1Q15154 2024 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 BPTFQ12830 3046 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 GIPC1O14908 333 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 PCDHGA12O60330 932 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 PSIP1O75475 530 aaKnown RBP9.85□□□□□ -0.83
CD44-207ENST00000425428 MATN4O95460 622 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 XRCC1P18887 633 aaPredicted RBP9.85□□□□□ -0.83
CD44-207ENST00000425428 CCND1P24385 295 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 GRK6P43250 576 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 NAA20P61599 178 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 PPP2R2AP63151 447 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 DAB2P98082 770 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 HHEXQ03014 270 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 PRKAA1Q13131 559 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 GBX1Q14549 363 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 TSNQ15631 228 aaKnown RBP9.85□□□□□ -0.83
CD44-207ENST00000425428 RPE65Q16518 533 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 CFAP157Q5JU67 520 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 CDKL4Q5MAI5 379 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 C6orf132Q5T0Z8 1188 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 CAPRIN2Q6IMN6 1127 aaKnown RBP9.85□□□□□ -0.83
CD44-207ENST00000425428 IYDQ6PHW0 289 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 FBXO39Q8N4B4 442 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 SPATA6LQ8N4H0 392 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 ARL10Q8N8L6 244 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 ANKRD42Q8N9B4 389 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 CCL4L1Q8NHW4 92 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 TCP10LQ8TDR4 215 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 PPP4R1Q8TF05 950 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 SETD7Q8WTS6 366 aaKnown RBP9.85□□□□□ -0.83
CD44-207ENST00000425428 ANKRD49Q8WVL7 239 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 ARL8AQ96BM9 186 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 TLCD1Q96CP7 247 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 AHCYL2Q96HN2 611 aaKnown RBP9.85□□□□□ -0.83
CD44-207ENST00000425428 SLC38A3Q99624 504 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 EDEM2Q9BV94 578 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 RDH14Q9HBH5 336 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 SEMA4GQ9NTN9 838 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 FAM86C1Q9NVL1 165 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 WWOXQ9NZC7 414 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 NUDT4Q9NZJ9 180 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 CPSF2Q9P2I0 782 aaKnown RBP9.85□□□□□ -0.83
CD44-207ENST00000425428 CPNE7Q9UBL6 633 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 CDYLQ9Y232 598 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 PLLPQ9Y342 182 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms