RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 CYBAP13498 195 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 ITIH1P19827 911 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 SLC6A4P31645 630 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 HPCAL1P37235 193 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 OR1G1P47890 313 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 HTR6P50406 440 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 RPS3AP61247 264 aaKnown RBP9.61□□□□□ -0.87
CD44-206ENST00000415148 DNASE1L3Q13609 305 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 ABRAXAS2Q15018 415 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 PTPRRQ15256 657 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 MAPKAPK3Q16644 382 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 RUNDC3AQ59EK9 446 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 LAIR1Q6GTX8 287 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 SBSNQ6UWP8 590 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 SLC24A5Q71RS6 500 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 CHST9Q7L1S5 443 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 ANKRD13BQ86YJ7 626 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 CFAP52Q8N1V2 620 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 TTC16Q8NEE8 873 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 LPCAT1Q8NF37 534 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 FRS2Q8WU20 508 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 C2orf15Q8WU43 125 aaKnown RBP9.61□□□□□ -0.87
CD44-206ENST00000415148 MUL1Q969V5 352 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 TBC1D20Q96BZ9 403 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 SLC47A1Q96FL8 570 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 RHNO1Q9BSD3 238 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 SPON2Q9BUD6 331 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 BEGAINQ9BUH8 593 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 IKZF5Q9H5V7 419 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 IPPKQ9H8X2 491 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 WARS2Q9UGM6 360 aaKnown RBP9.61□□□□□ -0.87
CD44-206ENST00000415148 LIMD1Q9UGP4 676 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 TSR3Q9UJK0 312 aaKnown RBP9.61□□□□□ -0.87
CD44-206ENST00000415148 DNMT3LQ9UJW3 386 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 NAALAD2Q9Y3Q0 740 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 PMF1-BGLAPU3KQ54 211 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 DOCK3Q8IZD9 2030 aa9.61□□□□□ -0.87
CD44-206ENST00000415148 PTGES3LE9PB15 166 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 GNGT2O14610 69 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 PRMT5O14744 637 aaPredicted RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 FFAR2O15552 330 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 CCDC159P0C7I6 412 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 SLC2A4P14672 509 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 RPS3P23396 243 aaKnown RBP eCLIP9.6□□□□□ -0.87
CD44-206ENST00000415148 ATP5C1P36542 298 aaKnown RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 TPD52P55327 224 aaPredicted RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 CD47Q08722 323 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 TRAF3Q13114 568 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 GPR17Q13304 367 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 OXA1LQ15070 435 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 CTF1Q16619 201 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 TRIM71Q2Q1W2 868 aaKnown RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 TMEM53Q6P2H8 277 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 CRTC3Q6UUV7 619 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 TRIM46Q7Z4K8 759 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 EID3Q8N140 333 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 TTC9BQ8N6N2 239 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 ZNF513Q8N8E2 541 aaPredicted RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 FBXO30Q8TB52 745 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 NDNFQ8TB73 568 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 GPR152Q8TDT2 470 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 FIG4Q92562 907 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 ZNF566Q969W8 418 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 CCDC138Q96M89 665 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 FAM193BQ96PV7 902 aaPredicted RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 ZNF347Q96SE7 839 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 SLX1AQ9BQ83 275 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 THUMPD3Q9BV44 507 aaKnown RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 CCSER2Q9H7U1 834 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 ACTR8Q9H981 624 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 DCAF13Q9NV06 445 aaKnown RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 DAPK2Q9UIK4 370 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 PKP3Q9Y446 797 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 OARD1Q9Y530 152 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 POLR3HQ9Y535 204 aaPredicted RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 SNX5Q9Y5X3 404 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 FRMPD3Q5JV73 1810 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 LOC100130705A0A1B0GUX0 176 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 HTR3EA5X5Y0 456 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 M0QX08 132 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 CXCR6O00574 342 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 AQP9O43315 295 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 XPNPEP2O43895 674 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 DFNA5O60443 496 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 GGT5P36269 586 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 ARL1P40616 181 aaPredicted RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 GNPDA1P46926 289 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 NRIP1P48552 1158 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 RGS4P49798 205 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 KCNQ1P51787 676 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 ISL1P61371 349 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 ZNF177Q13360 481 aaPredicted RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 TAF1CQ15572 869 aaPredicted RBP9.6□□□□□ -0.87
CD44-206ENST00000415148 PGS1Q32NB8 556 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 INAVAQ3KP66 663 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 CLLU1OSQ5K130 101 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 CACHD1Q5VU97 1274 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 ZNF691Q5VV52 312 aa9.6□□□□□ -0.87
CD44-206ENST00000415148 TMEM236Q5W0B7 351 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 162.5 ms