RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 EIF3LQ9Y262 564 aaKnown RBP12.46□□□□□ -0.41
SHMT1-205ENST00000395684 INVSQ9Y283 1065 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 NAALAD2Q9Y3Q0 740 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 MTMR11A4FU01 709 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 ARVCFO00192 962 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 XPNPEP2O43895 674 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 UGT2B11O75310 529 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CREG1O75629 220 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 SCELO95171 688 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CD160O95971 181 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 ASGR1P07306 291 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 ITIH1P19827 911 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CDH3P22223 829 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 MAGEA10P43363 369 aaPredicted RBP12.45□□□□□ -0.42
SHMT1-205ENST00000395684 EMX1Q04741 257 aaPredicted RBP12.45□□□□□ -0.42
SHMT1-205ENST00000395684 MRPL58Q14197 206 aaKnown RBP12.45□□□□□ -0.42
SHMT1-205ENST00000395684 LINGO4Q6UY18 593 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 RNF19BQ6ZMZ0 732 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 ANKRD13BQ86YJ7 626 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 OR52E4Q8NGH9 312 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CLHC1Q8NHS4 586 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 ADGRE3Q9BY15 652 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 GPR62Q9BZJ7 368 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 DPY30Q9C005 99 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CIPCQ9C0C6 399 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CCDC90BQ9GZT6 254 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 KAT8Q9H7Z6 458 aaKnown RBP12.45□□□□□ -0.42
SHMT1-205ENST00000395684 C3orf18Q9UK00 162 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 GLTPD2A6NH11 291 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 TOR1BO14657 336 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 PRMT5O14744 637 aaPredicted RBP12.45□□□□□ -0.42
SHMT1-205ENST00000395684 MSH3P20585 1137 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 RAD23AP54725 363 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 PHC1P78364 1004 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CD300CQ08708 224 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CDK5R2Q13319 367 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 TAF1CQ15572 869 aaPredicted RBP12.45□□□□□ -0.42
SHMT1-205ENST00000395684 SGO1Q5FBB7 561 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 DET1Q7L5Y6 550 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 GPR149Q86SP6 731 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 DENND1CQ8IV53 801 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 ADHFE1Q8IWW8 467 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 MICU2Q8IYU8 434 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 OR5K1Q8NHB7 308 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 LKAAEAR1Q8TD35 194 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 BOCQ9BWV1 1114 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CLMPQ9H6B4 373 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 IL17CQ9P0M4 197 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 AASSQ9UDR5 926 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 PAIP2BQ9ULR5 123 aaKnown RBP12.45□□□□□ -0.42
SHMT1-205ENST00000395684 PCDHB14Q9Y5E9 798 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 SNX5Q9Y5X3 404 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 TRBV5-3A0A0A0MS03 114 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CLDN25C9JDP6 229 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 RAD51BO15315 384 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 RGS14O43566 566 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 MITFO75030 526 aaPredicted RBP12.45□□□□□ -0.42
SHMT1-205ENST00000395684 NDUFS2O75306 463 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 E2F6O75461 281 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 SERPINA1P01009 418 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 KLKB1P03952 638 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 IL6P05231 212 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CTGFP29279 349 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 NRIP1P48552 1158 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 DUSP4Q13115 394 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 RAPSNQ13702 412 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 PHKG1Q16816 387 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 C17orf99Q6UX52 265 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 SNX29P2Q8IUI4 249 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 RGL4Q8IZJ4 473 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 EID3Q8N140 333 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 PARP8Q8N3A8 854 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 FAR1Q8WVX9 515 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 NCLNQ969V3 563 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 OR52E6Q96RD3 313 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 VNN3Q9NY84 501 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 KLQ9UEF7 1012 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 CPQQ9Y646 472 aa12.45□□□□□ -0.42
SHMT1-205ENST00000395684 ZNF99A8MXY4 864 aaPredicted RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 SYN3O14994 580 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 SLC16A6O15403 523 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 SEC22BO75396 215 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 GJB5O95377 273 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 GLUD1P00367 558 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 S100BP04271 92 aaPredicted RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 UGT2B4P06133 528 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 RETP07949 1114 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 RHOCP08134 193 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 CYBAP13498 195 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 CD6P30203 668 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 GNPDA1P46926 289 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 RXRGP48443 463 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 GZMMP51124 257 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 KPNA1P52294 538 aaPredicted RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 ARF5P84085 180 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 CACNG1Q06432 222 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 VAC14Q08AM6 782 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 TRIM32Q13049 653 aa12.44□□□□□ -0.42
SHMT1-205ENST00000395684 TOP3AQ13472 1001 aaPredicted RBP12.44□□□□□ -0.42
SHMT1-205ENST00000395684 OXA1LQ15070 435 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms