RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TXNDC8Q6A555 127 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 PDE12Q6L8Q7 609 aaKnown RBP11.28□□□□□ -0.6
USP53-201ENST00000274030 TMC8Q8IU68 726 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 LEMD2Q8NC56 503 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 PJA1Q8NG27 643 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 ZNF384Q8TF68 577 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 SLC13A3Q8WWT9 602 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 TOP1MTQ969P6 601 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 CDH7Q9ULB5 785 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 IGKV6D-41A0A0C4DH26 115 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 TOR1BO14657 336 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 IRAK2O43187 625 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 CPN2P22792 545 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 PRR5P85299 388 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 PPP1R8Q12972 351 aaKnown RBP11.28□□□□□ -0.6
USP53-201ENST00000274030 CRHR2Q13324 411 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 LAPTM5Q13571 262 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 LRP10Q7Z4F1 713 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 LNX2Q8N448 690 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 NKD1Q969G9 470 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 COQ10BQ9H8M1 238 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 IFT80Q9P2H3 777 aaPredicted RBP11.28□□□□□ -0.6
USP53-201ENST00000274030 IGSF9Q9P2J2 1179 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 CXorf49A8MYA2 514 aaPredicted RBP11.28□□□□□ -0.6
USP53-201ENST00000274030 J3KR12 359 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 RGS20O76081 388 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 CCNB2O95067 398 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 SNX4O95219 450 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 TIE1P35590 1138 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 ACTR3P61158 418 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 TLCD1Q96CP7 247 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 TBX5Q99593 518 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 POMPQ9Y244 141 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 PCDHGA11Q9Y5H2 935 aa11.28□□□□□ -0.6
USP53-201ENST00000274030 ITM2AO43736 263 aa11.27□□□□□ -0.6
USP53-201ENST00000274030 AVPR1BP47901 424 aa11.27□□□□□ -0.6
USP53-201ENST00000274030 DPYSL2Q16555 572 aa11.27□□□□□ -0.6
USP53-201ENST00000274030 EGFLAMQ63HQ2 1017 aa11.27□□□□□ -0.6
USP53-201ENST00000274030 FBXL22Q6P050 247 aa11.27□□□□□ -0.6
USP53-201ENST00000274030 IQCHQ86VS3 1027 aa11.27□□□□□ -0.6
USP53-201ENST00000274030 MMAAQ8IVH4 418 aaKnown RBP11.27□□□□□ -0.6
USP53-201ENST00000274030 OR10H4Q8NGA5 316 aa11.27□□□□□ -0.6
USP53-201ENST00000274030 GPR151Q8TDV0 419 aa11.27□□□□□ -0.6
USP53-201ENST00000274030 KCNS3Q9BQ31 491 aa11.27□□□□□ -0.6
USP53-201ENST00000274030 NTPCRQ9BSD7 190 aaKnown RBP11.27□□□□□ -0.6
USP53-201ENST00000274030 HSD3B7Q9H2F3 369 aa11.27□□□□□ -0.6
USP53-201ENST00000274030 MALT1Q9UDY8 824 aa11.27□□□□□ -0.6
USP53-201ENST00000274030 RSL1D1O76021 490 aaKnown RBP11.27□□□□□ -0.61
USP53-201ENST00000274030 GADD45GO95257 159 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 ACVRL1P37023 503 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 ACTR1BP42025 376 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 KCNQ1P51787 676 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 ACTR1AP61163 376 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 PPIGQ13427 754 aaKnown RBP eCLIP11.27□□□□□ -0.61
USP53-201ENST00000274030 AMZ2Q86W34 360 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 COX18Q8N8Q8 333 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 PIGXQ8TBF5 258 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 NODALQ96S42 347 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 ZNF395Q9H8N7 513 aaPredicted RBP11.27□□□□□ -0.61
USP53-201ENST00000274030 ING3Q9NXR8 418 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 FAM172BPA6NC97 362 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 C8GP07360 202 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 KCNA5P22460 613 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 OR5AK3PQ8NH89 298 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 HM13Q8TCT9 377 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 NSMCE3Q96MG7 304 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 GFM1Q96RP9 751 aaKnown RBP11.27□□□□□ -0.61
USP53-201ENST00000274030 MCCC1Q96RQ3 725 aaPredicted RBP11.27□□□□□ -0.61
USP53-201ENST00000274030 GSDMCQ9BYG8 508 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 WDR12Q9GZL7 423 aaKnown RBP11.27□□□□□ -0.61
USP53-201ENST00000274030 BCL9LQ86UU0 1499 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 DPPA5A6NC42 116 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 TMEM233B4DJY2 109 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 SCELO95171 688 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 SYN1P17600 705 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 C5orf22Q49AR2 442 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 ZDHHC24Q6UX98 284 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 USP30Q70CQ3 517 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 PIM3Q86V86 326 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 SLC39A3Q9BRY0 314 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 DUSP26Q9BV47 211 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 SLC2A6Q9UGQ3 507 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 PRDM4Q9UKN5 801 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 ADAMDEC1O15204 470 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 PRPS2P11908 318 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 TARDBPQ13148 414 aaKnown RBP eCLIP11.27□□□□□ -0.61
USP53-201ENST00000274030 NCBP2-AS2Q69YL0 99 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 KIAA0930Q6ICG6 404 aaPredicted RBP11.27□□□□□ -0.61
USP53-201ENST00000274030 BORCS5Q969J3 196 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 SLC35G5Q96KT7 338 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 RIOK2Q9BVS4 552 aaKnown RBP11.27□□□□□ -0.61
USP53-201ENST00000274030 EBF3Q9H4W6 596 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 MRPS30Q9NP92 439 aaKnown RBP11.27□□□□□ -0.61
USP53-201ENST00000274030 TAS2R1Q9NYW7 299 aa11.27□□□□□ -0.61
USP53-201ENST00000274030 A8MUA0 341 aa11.26□□□□□ -0.61
USP53-201ENST00000274030 SLC30A4O14863 429 aa11.26□□□□□ -0.61
USP53-201ENST00000274030 LDB2O43679 373 aa11.26□□□□□ -0.61
USP53-201ENST00000274030 AIREO43918 545 aa11.26□□□□□ -0.61
USP53-201ENST00000274030 GPIP06744 558 aa11.26□□□□□ -0.61
USP53-201ENST00000274030 DNASE1L1P49184 302 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms