RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 NXPE1Q8N323 547 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 CPSF7Q8N684 471 aaKnown RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 XKR8Q9H6D3 395 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 CRTAC1Q9NQ79 661 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 PAK6Q9NQU5 681 aaPredicted RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 MIOSQ9NXC5 875 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 KCNN3Q9UGI6 736 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 SP3Q02447 781 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 KCTD9Q7L273 389 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 VASH1Q7L8A9 365 aaPredicted RBP11.21□□□□□ -0.61
PTPN4-201ENST00000263708 C7orf57Q8NEG2 295 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 OR4K2Q8NGD2 314 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 ZNF398Q8TD17 642 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 CPNE2Q96FN4 548 aaPredicted RBP11.21□□□□□ -0.61
PTPN4-201ENST00000263708 ADAD1Q96M93 576 aaKnown RBP11.21□□□□□ -0.61
PTPN4-201ENST00000263708 P2RX7Q99572 595 aaKnown RBP11.21□□□□□ -0.61
PTPN4-201ENST00000263708 BBIP1A8MTZ0 92 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 RORCP51449 518 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 GLYATQ6IB77 296 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 ATAD1Q8NBU5 361 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 CYP2W1Q8TAV3 490 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 NECAB3Q96P71 396 aaPredicted RBP11.21□□□□□ -0.61
PTPN4-201ENST00000263708 GORASP1Q9BQQ3 440 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 DNAAF2Q9NVR5 837 aaKnown RBP11.21□□□□□ -0.61
PTPN4-201ENST00000263708 REXO2Q9Y3B8 237 aaKnown RBP11.21□□□□□ -0.61
PTPN4-201ENST00000263708 H0YJX3 145 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 RPS2P15880 293 aaKnown RBP11.21□□□□□ -0.61
PTPN4-201ENST00000263708 GCNT1Q02742 428 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 CREB5Q02930 508 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 ARCQ7LC44 396 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 PLA2G15Q8NCC3 412 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 TTPALQ9BTX7 342 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 CALML5Q9NZT1 146 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 PEX12O00623 359 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 GANABQ14697 944 aaKnown RBP11.21□□□□□ -0.61
PTPN4-201ENST00000263708 LINGO4Q6UY18 593 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 PNPLA2Q96AD5 504 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 CNDP2Q96KP4 475 aaKnown RBP11.21□□□□□ -0.61
PTPN4-201ENST00000263708 POLMQ9NP87 494 aaPredicted RBP11.21□□□□□ -0.61
PTPN4-201ENST00000263708 ZNF180Q9UJW8 692 aa11.21□□□□□ -0.61
PTPN4-201ENST00000263708 CLDN25C9JDP6 229 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 ZYG11AQ6WRX3 759 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 TAS1R3Q7RTX0 852 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 FBXO22Q8NEZ5 403 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 SLC35G5Q96KT7 338 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 TRMT61BQ9BVS5 477 aaKnown RBP11.21□□□□□ -0.62
PTPN4-201ENST00000263708 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.21□□□□□ -0.621e-6■■■■□ 24.8
PTPN4-201ENST00000263708 PCDH18Q9HCL0 1135 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 ARHGAP20Q9P2F6 1191 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 TEX13DA0A0J9YY54 714 aaPredicted RBP11.21□□□□□ -0.62
PTPN4-201ENST00000263708 TNFRSF10BO14763 440 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 HDAC3O15379 428 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 ITGAVP06756 1048 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 CPN2P22792 545 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 BLMHQ13867 455 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 RBM39Q14498 530 aaKnown RBP11.21□□□□□ -0.62
PTPN4-201ENST00000263708 BRMS1LQ5PSV4 323 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 EGFLAMQ63HQ2 1017 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 DCLRE1AQ6PJP8 1040 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 MKKSQ9NPJ1 570 aaPredicted RBP11.21□□□□□ -0.62
PTPN4-201ENST00000263708 DNAJC28Q9NX36 388 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 PCDHGC3Q9UN70 934 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 FADS3Q9Y5Q0 445 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 FKTNO75072 461 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 ENTPD5O75356 428 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 GLRA2P23416 452 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 CDK18Q07002 472 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 NFATC2Q13469 925 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 FBXO48Q5FWF7 155 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 HOPXQ9BPY8 73 aaPredicted RBP11.21□□□□□ -0.62
PTPN4-201ENST00000263708 NPLQ9BXD5 320 aaPredicted RBP11.21□□□□□ -0.62
PTPN4-201ENST00000263708 NUDT15Q9NV35 164 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 H3BQF6 201 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 GABBR2O75899 941 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 RPIAP49247 311 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 C2orf76Q3KRA6 126 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 PRPF38BQ5VTL8 546 aaKnown RBP11.21□□□□□ -0.62
PTPN4-201ENST00000263708 ZPBP2Q6X784 338 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 SLC44A3Q8N4M1 653 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 DCBLD1Q8N8Z6 715 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 OR4K17Q8NGC6 315 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 HMGB4Q8WW32 186 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 TBC1D14Q9P2M4 693 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 VWA7Q9Y334 891 aa11.21□□□□□ -0.62
PTPN4-201ENST00000263708 ADAMTS3O15072 1205 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 ADAMDEC1O15204 470 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 RNASEH2BQ5TBB1 312 aaKnown RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 KIAA1161Q6NSJ0 714 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 TMEM156Q8N614 296 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 BOLLQ8N9W6 283 aaKnown RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 PDPRQ8NCN5 879 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 OR2T34Q8NGX1 318 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 OR2T3Q8NH03 318 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 TWIST2Q8WVJ9 160 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 CIB1Q99828 191 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 PNPOQ9NVS9 261 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 RPP40O75818 363 aaKnown RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 SLC16A8O95907 504 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 ZNF35P13682 527 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 PTPRAP18433 802 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms