RNA–Protein interactions for RNA: ENST00000622836.1

PCDHGC3-208, Transcript of protocadherin gamma subfamily C, 3, human

TSL 3

Gene PCDHGC3, Length 795 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDHGC3-208	ENST00000622836	OCIAD1	Q9NX40	245 aa		13.62	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	SLC39A1	Q9NY26	324 aa		13.62	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	PDP2	Q9P2J9	529 aa		13.62	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	VPS9D1	Q9Y2B5	631 aa		13.62	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	ZZEF1	O43149	2961 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	PKD1L2	Q7Z442	2459 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	SLC5A10	A0PJK1	596 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	NDC80	O14777	642 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	NVL	O15381	856 aa	Known RBP	13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	KLK10	O43240	276 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	PRAMEF10	O60809	474 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	BANF1	O75531	89 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	C9	P02748	559 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	FGF3	P11487	239 aa	Predicted RBP	13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	RPS3	P23396	243 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	ARL4D	P49703	201 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	MRPS25	P82663	173 aa	Known RBP	13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	PRKG2	Q13237	762 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	TYSND1	Q2T9J0	566 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	C19orf48	Q6RUI8	117 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	OTOA	Q7RTW8	1153 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	MAATS1	Q7Z4T9	603 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CILP2	Q8IUL8	1156 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	AGGF1	Q8N302	714 aa	eCLIP	13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	GABPB2	Q8TAK5	448 aa	Predicted RBP	13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	LKAAEAR1	Q8TD35	194 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CALML6	Q8TD86	181 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	LPGAT1	Q92604	370 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	P2RY12	Q9H244	342 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	TRIT1	Q9H3H1	467 aa	Known RBP	13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CRYL1	Q9Y2S2	319 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	TDRKH	Q9Y2W6	561 aa	Known RBP	13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	PCDHGA7	Q9Y5G6	932 aa		13.61	□□□□□ -0.23
PCDHGC3-208	ENST00000622836		A0A087WV48	116 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	ZCWPW2	A0A1B0GU75	182 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	GSAP	A4D1B5	854 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	OR5K3	A6NET4	321 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836		E5RI56	91 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836		H3BMM5	538 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	KPNA5	O15131	536 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	TOX3	O15405	576 aa	Predicted RBP	13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	KIF1C	O43896	1103 aa	Known RBP	13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	KDM1A	O60341	852 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	URI1	O94763	535 aa	Predicted RBP	13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	SEC31A	O94979	1220 aa	Known RBP	13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	TTC4	O95801	387 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	ANKRD34C	P0C6C1	535 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CHRM3	P20309	590 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	IVD	P26440	423 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	ARL4C	P56559	192 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	RAB15	P59190	212 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	PPP1CA	P62136	330 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CKAP4	Q07065	602 aa	Known RBP	13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	FOXM1	Q08050	763 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CALCOCO2	Q13137	446 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	HIF1A	Q16665	826 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	DCAF12	Q5T6F0	453 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	BROX	Q5VW32	411 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	HIBCH	Q6NVY1	386 aa	Predicted RBP	13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	KCNMB4	Q86W47	210 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	LMNTD2	Q8IXW0	634 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	TBC1D21	Q8IYX1	336 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	BBOF1	Q8ND07	529 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	OR52E1	Q8NGJ3	308 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	OR5AR1	Q8NGP9	310 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CFAP61	Q8NHU2	1237 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	FAM136A	Q96C01	138 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	EBNA1BP2	Q99848	306 aa	Known RBP	13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	FAM167B	Q9BTA0	163 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	NAT9	Q9BTE0	207 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	RAB33B	Q9H082	229 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CCDC68	Q9H2F9	335 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	INTS10	Q9NVR2	710 aa	Known RBP	13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	EPHA6	Q9UF33	1036 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	SNX24	Q9Y343	169 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	FAM169A	Q9Y6X4	670 aa		13.6	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	DSP	P15924	2871 aa	Known RBP	13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	FAM187A	A6NFU0	413 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836		B4E171	279 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	C9orf172	C9J069	976 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	BHMG1	C9JSJ3	638 aa	Predicted RBP	13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	ESR1	P03372	595 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	RPN2	P04844	631 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	POLR2C	P19387	275 aa	Predicted RBP	13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	ITPKB	P27987	946 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	AOAH	P28039	575 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	ACADL	P28330	430 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	TSPAN7	P41732	249 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	ABR	Q12979	859 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CTBP1	Q13363	440 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CRYM	Q14894	314 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	MSS51	Q4VC12	460 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CTSL3P	Q5NE16	218 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	ANKS6	Q68DC2	871 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	CENPU	Q71F23	418 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	PRSS42	Q7Z5A4	293 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	AMIGO1	Q86WK6	493 aa		13.59	□□□□□ -0.23
PCDHGC3-208	ENST00000622836	DENND6A	Q8IWF6	608 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms