RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 GEMP55040 296 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 CSNK2BP67870 215 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 SEMA3BQ13214 749 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 RAPSNQ13702 412 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 MFSD10Q14728 455 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 SLC10A6Q3KNW5 377 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 PLA2G4EQ3MJ16 856 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 OTUD1Q5VV17 481 aaPredicted RBP10.65□□□□□ -0.71
UPF3A-212ENST00000619079 CCSAPQ6IQ19 270 aaPredicted RBP10.65□□□□□ -0.71
UPF3A-212ENST00000619079 CAPN13Q6MZZ7 669 aaPredicted RBP10.65□□□□□ -0.71
UPF3A-212ENST00000619079 SYCE2Q6PIF2 218 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 C14orf80Q86SX3 495 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 TMEM130Q8N3G9 435 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 PTGR2Q8N8N7 351 aaPredicted RBP10.65□□□□□ -0.71
UPF3A-212ENST00000619079 ZNF540Q8NDQ6 660 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 RPL3LQ92901 407 aaKnown RBP10.65□□□□□ -0.71
UPF3A-212ENST00000619079 RIPOR3Q96MK2 946 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 FCRL5Q96RD9 977 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 C16orf70Q9BSU1 422 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 PIF1Q9H611 641 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 C11orf49Q9H6J7 331 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 MAGIXQ9H6Y5 334 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 PLEKHA5Q9HAU0 1116 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 EHD3Q9NZN3 535 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 UBA2Q9UBT2 640 aaPredicted RBP10.65□□□□□ -0.71
UPF3A-212ENST00000619079 PNMA8BQ9ULN7 279 aaPredicted RBP10.65□□□□□ -0.71
UPF3A-212ENST00000619079 USP22Q9UPT9 525 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 SYNJ2BP-COX16A0A087WUM0 186 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 F2P00734 622 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 MSH3P20585 1137 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 ADORA2BP29275 332 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 GGT5P36269 586 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 SLC15A1P46059 708 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 ERVK-8P63133 956 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 RACK1P63244 317 aaKnown RBP10.64□□□□□ -0.71
UPF3A-212ENST00000619079 NKX3-2P78367 333 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 GALNT3Q14435 633 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 YIF1BQ5BJH7 314 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 LRRC8DQ7L1W4 858 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 ZFAND4Q86XD8 727 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 FAM20CQ8IXL6 584 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 NPWQ8N729 165 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 BEND7Q8N7W2 519 aaPredicted RBP10.64□□□□□ -0.71
UPF3A-212ENST00000619079 PSD4Q8NDX1 1056 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 IPMKQ8NFU5 416 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 OR6B3Q8NGW1 331 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 ANKRD49Q8WVL7 239 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 ST6GAL2Q96JF0 529 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 ZFYVE19Q96K21 471 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 TMEM209Q96SK2 561 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 TMPRSS4Q9NRS4 437 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 PAQR5Q9NXK6 330 aaPredicted RBP10.64□□□□□ -0.71
UPF3A-212ENST00000619079 FBXL12Q9NXK8 326 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 TAS2R9Q9NYW1 312 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 COX16Q9P0S2 106 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 SLC2A6Q9UGQ3 507 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 AP3M1Q9Y2T2 418 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 ARNTLO00327 626 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 WISP3O95389 354 aaPredicted RBP10.64□□□□□ -0.71
UPF3A-212ENST00000619079 FTH1P02794 183 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 HOXD8P13378 290 aaPredicted RBP10.64□□□□□ -0.71
UPF3A-212ENST00000619079 IGFBP5P24593 272 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 FMO3P31513 532 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 PSEN2P49810 448 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 FOXA1P55317 472 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 UFM1P61960 85 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 FAM187BQ17R55 369 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 ATP6AP1LQ52LC2 224 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 DENND5AQ6IQ26 1287 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 ZNF517Q6ZMY9 492 aaPredicted RBP10.64□□□□□ -0.71
UPF3A-212ENST00000619079 VN1R5Q7Z5H4 357 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 RAB43Q86YS6 212 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 OR2T12Q8NG77 320 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 COQ7Q99807 217 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 FICDQ9BVA6 458 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 MKRN2Q9H000 416 aaKnown RBP10.64□□□□□ -0.71
UPF3A-212ENST00000619079 ZBTB20Q9HC78 741 aaPredicted RBP10.64□□□□□ -0.71
UPF3A-212ENST00000619079 SLAMF8Q9P0V8 285 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 LIMD1Q9UGP4 676 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 BTRCQ9Y297 605 aa10.64□□□□□ -0.71
UPF3A-212ENST00000619079 HMX3A6NHT5 357 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 FAM20BO75063 409 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 SCELO95171 688 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 ITGA2P17301 1181 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 FSHRP23945 695 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 CTSKP43235 329 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 FPGSQ05932 587 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 GPR50Q13585 617 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 GPR158Q5T848 1215 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 OTOP3Q7RTS5 596 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 PLPPR4Q7Z2D5 763 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 ADAMTSL2Q86TH1 951 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 HS3ST5Q8IZT8 346 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 FAM109AQ8N4B1 249 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 PAF1Q8N7H5 531 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 RHEBL1Q8TAI7 183 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 FBXO30Q8TB52 745 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 TEX37Q96LM6 180 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 PHOX2BQ99453 314 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 FSD1LQ9BXM9 530 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms