RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CDH19Q9H159 772 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 LHX5Q9H2C1 402 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 SUV39H2Q9H5I1 410 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CAAP1Q9H8G2 361 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CLK4Q9HAZ1 481 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 MAGEE1Q9HCI5 957 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 KMT5AQ9NQR1 393 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 EIF2B3Q9NR50 452 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 SLC38A7Q9NVC3 462 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ATAD3AQ9NVI7 634 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 GID8Q9NWU2 228 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 UCKL1Q9NWZ5 548 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 UTP6Q9NYH9 597 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 SPATA7Q9P0W8 599 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CFAP97Q9P2B7 532 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ZC3H7BQ9UGR2 993 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 SUN2Q9UH99 717 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 DCDC2Q9UHG0 476 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ACSL6Q9UKU0 697 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 EMCNQ9ULC0 261 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 PCDHB4Q9Y5E5 795 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TP53BP1Q12888 1972 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 LY6G6EA0A0G2JKS1 128 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 GOLGA8IPA6NC78 632 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 TMEM247A6NEH6 219 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 GOLGA8JA6NMD2 632 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 CXorf49A8MYA2 514 aaPredicted RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 SLCO1B7G3V0H7 640 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 MKRN2OSH3BPM6 223 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 H3BSA7 217 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 GFRA2O00451 464 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 TPP1O14773 563 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 HNRNPDLO14979 420 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 ZBTB14O43829 449 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 SNAP91O60641 907 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 LYPLA1O75608 230 aaPredicted RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 SULT1C4O75897 302 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 CPNE6O95741 557 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 LDHAP00338 332 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 GSRP00390 522 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 PDGFAP04085 211 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 ALPPL2P10696 532 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 MCF2P10911 925 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 HAPLN1P10915 354 aaPredicted RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 MLNP12872 115 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 ZNF26P17031 533 aaPredicted RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 XRCC1P18887 633 aaPredicted RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 CAPN3P20807 821 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 ME2P23368 584 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 MYF6P23409 242 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 JAK1P23458 1154 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 KDELR1P24390 212 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 ITGA3P26006 1051 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 PIK3R1P27986 724 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 SSTR2P30874 369 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 YWHABP31946 246 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 RBMXP38159 391 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 NPTX2P47972 431 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 ERFP50548 548 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 HNRNPFP52597 415 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 PER3P56645 1201 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 RPL7AP62424 266 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 DYNLT1P63172 113 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 CTBSQ01459 385 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 CDC20Q12834 499 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 TRAP1Q12931 704 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 ZNF177Q13360 481 aaPredicted RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 BMPR2Q13873 1038 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 FRG1Q14331 258 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 INAQ16352 499 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 MOGQ16653 247 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 NDUFA5Q16718 116 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 RGS21Q2M5E4 152 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 INTS11Q5TA45 600 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 ATP1A1-AS1Q5TC04 95 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 IL23RQ5VWK5 629 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 THOC7Q6I9Y2 204 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 TCTN3Q6NUS6 607 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 TMEM270Q6UE05 265 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 EPGNQ6UW88 154 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 OLFML1Q6UWY5 402 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 LINC00114Q6XXX2 140 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 UNC5AQ6ZN44 842 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 ZCCHC23Q6ZST2 131 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 SNX32Q86XE0 403 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 DTX1Q86Y01 620 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 UNC45BQ8IWX7 931 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 ADGRF2Q8IZF7 708 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 UNC5BQ8IZJ1 945 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 DSELQ8IZU8 1212 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 LILRA2Q8N149 483 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 CENPSQ8N2Z9 138 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 NXPE1Q8N323 547 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 Q8N3U1 123 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 ANKFN1Q8N957 763 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 MFSD2AQ8NA29 543 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 KYQ8NBH2 561 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 GOLM1Q8NBJ4 401 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 SLC4A11Q8NBS3 891 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms