RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ITGB6P18564 788 aa23.25■■□□□ 1.31
SHMT1-206ENST00000579558 NELFEP18615 380 aaKnown RBP23.25■■□□□ 1.31
SHMT1-206ENST00000579558 POLR2CP19387 275 aaPredicted RBP23.25■■□□□ 1.31
SHMT1-206ENST00000579558 RHDQ02161 417 aa23.25■■□□□ 1.31
SHMT1-206ENST00000579558 PRKAA1Q13131 559 aa23.25■■□□□ 1.31
SHMT1-206ENST00000579558 CES3Q6UWW8 571 aa23.25■■□□□ 1.31
SHMT1-206ENST00000579558 OTUD6BQ8N6M0 293 aa23.25■■□□□ 1.31
SHMT1-206ENST00000579558 SIDT2Q8NBJ9 832 aaKnown RBP23.25■■□□□ 1.31
SHMT1-206ENST00000579558 TSSK1BQ9BXA7 367 aa23.25■■□□□ 1.31
SHMT1-206ENST00000579558 PILRAQ9UKJ1 303 aa23.25■■□□□ 1.31
SHMT1-206ENST00000579558 FASNP49327 2511 aaKnown RBP23.24■■□□□ 1.31
SHMT1-206ENST00000579558 SLC5A10A0PJK1 596 aa23.24■■□□□ 1.31
SHMT1-206ENST00000579558 PRMT5O14744 637 aaPredicted RBP23.24■■□□□ 1.31
SHMT1-206ENST00000579558 STK17BO94768 372 aa23.24■■□□□ 1.31
SHMT1-206ENST00000579558 ARL4DP49703 201 aa23.24■■□□□ 1.31
SHMT1-206ENST00000579558 PLOD1Q02809 727 aaPredicted RBP23.24■■□□□ 1.31
SHMT1-206ENST00000579558 PRKG2Q13237 762 aa23.24■■□□□ 1.31
SHMT1-206ENST00000579558 CASC4Q6P4E1 433 aa23.24■■□□□ 1.31
SHMT1-206ENST00000579558 CAND1Q86VP6 1230 aaKnown RBP23.24■■□□□ 1.31
SHMT1-206ENST00000579558 MPP5Q8N3R9 675 aa23.24■■□□□ 1.31
SHMT1-206ENST00000579558 OR52E1Q8NGJ3 308 aa23.24■■□□□ 1.31
SHMT1-206ENST00000579558 SLC41A2Q96JW4 573 aa23.24■■□□□ 1.31
SHMT1-206ENST00000579558 SPRY4Q9C004 299 aa23.24■■□□□ 1.31
SHMT1-206ENST00000579558 PYCARDQ9ULZ3 195 aa23.24■■□□□ 1.31
SHMT1-206ENST00000579558 ASF1AQ9Y294 204 aa23.24■■□□□ 1.31
SHMT1-206ENST00000579558 VAPBO95292 243 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 ARNTP27540 789 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 KPNA2P52292 529 aaKnown RBP23.23■■□□□ 1.31
SHMT1-206ENST00000579558 CSE1LP55060 971 aaKnown RBP23.23■■□□□ 1.31
SHMT1-206ENST00000579558 GNG11P61952 73 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 COL9A2Q14055 689 aaPredicted RBP23.23■■□□□ 1.31
SHMT1-206ENST00000579558 IL11RAQ14626 422 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 KIAA1614Q5VZ46 1190 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 CYB5D1Q6P9G0 228 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 KMT5CQ86Y97 462 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 NLGN4XQ8N0W4 816 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 MCUQ8NE86 351 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 NLGN4YQ8NFZ3 816 aaPredicted RBP23.23■■□□□ 1.31
SHMT1-206ENST00000579558 OR5AR1Q8NGP9 310 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 LKAAEAR1Q8TD35 194 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 ELMO2Q96JJ3 720 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 CARD6Q9BX69 1037 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 TFB2MQ9H5Q4 396 aaKnown RBP23.23■■□□□ 1.31
SHMT1-206ENST00000579558 XAB2Q9HCS7 855 aaKnown RBP23.23■■□□□ 1.31
SHMT1-206ENST00000579558 SAMD15Q9P1V8 674 aa23.23■■□□□ 1.31
SHMT1-206ENST00000579558 TMEM184BQ9Y519 407 aaPredicted RBP23.23■■□□□ 1.31
SHMT1-206ENST00000579558 MGAQ8IWI9 3026 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 GSAPA4D1B5 854 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 IQCF5A8MTL0 148 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 BHMG1C9JSJ3 638 aaPredicted RBP23.22■■□□□ 1.31
SHMT1-206ENST00000579558 GOLGA8MH3BSY2 632 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 ERVH48-1M5A8F1 160 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 MATN2O00339 956 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 ATXN7O15265 892 aaPredicted RBP23.22■■□□□ 1.31
SHMT1-206ENST00000579558 NDUFS3O75489 264 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 MLNP12872 115 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 ACADLP28330 430 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 CCR7P32248 378 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 KCNAB1Q14722 419 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 PPP1R7Q15435 360 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 ARMC3Q5W041 872 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 PTRHD1Q6GMV3 140 aaKnown RBP23.22■■□□□ 1.31
SHMT1-206ENST00000579558 RASGRP3Q8IV61 690 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 ZSCAN1Q8NBB4 408 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 ULBP3Q9BZM4 244 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 GNPTGQ9UJJ9 305 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 POMT2Q9UKY4 750 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 PCDHGA4Q9Y5G9 962 aa23.22■■□□□ 1.31
SHMT1-206ENST00000579558 EIF4E1BA6NMX2 242 aaKnown RBP23.21■■□□□ 1.31
SHMT1-206ENST00000579558 BTN3A1O00481 513 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 DLGAP3O95886 979 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 FOLR1P15328 257 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 PAMP19021 973 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 WT1P19544 449 aaPredicted RBP23.21■■□□□ 1.31
SHMT1-206ENST00000579558 MAP4P27816 1152 aaKnown RBP23.21■■□□□ 1.31
SHMT1-206ENST00000579558 HSPA14Q0VDF9 509 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 TUBB3Q13509 450 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 KIAA0930Q6ICG6 404 aaPredicted RBP23.21■■□□□ 1.31
SHMT1-206ENST00000579558 MRNIPQ6NTE8 343 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 TIPARPQ7Z3E1 657 aaKnown RBP23.21■■□□□ 1.31
SHMT1-206ENST00000579558 SDCCAG8Q86SQ7 713 aaPredicted RBP23.21■■□□□ 1.31
SHMT1-206ENST00000579558 AMIGO1Q86WK6 493 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 PPP1R3BQ86XI6 285 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 TBC1D21Q8IYX1 336 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 CARFQ8N187 725 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 KRT222Q8N1A0 295 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 RNF31Q96EP0 1072 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 SERPINB12Q96P63 405 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 NRTNQ99748 197 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 DDX47Q9H0S4 455 aaKnown RBP23.21■■□□□ 1.31
SHMT1-206ENST00000579558 TRIT1Q9H3H1 467 aaKnown RBP23.21■■□□□ 1.31
SHMT1-206ENST00000579558 XKR8Q9H6D3 395 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 PDE7BQ9NP56 450 aa23.21■■□□□ 1.31
SHMT1-206ENST00000579558 SDR42E2A6NKP2 422 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 GOLGA8KD6RF30 607 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 GOLGA8TH3BQL2 631 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 BTN3A3O00478 584 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 ZBTB11O95625 1053 aaPredicted RBP23.2■■□□□ 1.3
SHMT1-206ENST00000579558 APOA4P06727 396 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 EBLN1P0CF75 366 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 153.3 ms