RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MILR1Q7Z6M3 343 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 SLCO6A1Q86UG4 719 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 C10orf111Q8N326 155 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 ZFP90Q8TF47 636 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 GTF2H4Q92759 462 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 SEPT3Q9UH03 358 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 TRIM17Q9Y577 477 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 CLDN25C9JDP6 229 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 ARNTLO00327 626 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 CXCR6O00574 342 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 B3GALT4O96024 378 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 FTH1P02794 183 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 GSNP06396 782 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 OR1G1P47890 313 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 EIF2B2P49770 351 aaKnown RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 YBEYP58557 167 aaPredicted RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 RAB15P59190 212 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 ISL1P61371 349 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 IL5RAQ01344 420 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 OCA2Q04671 838 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 DGCR6Q14129 220 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 CTF1Q16619 201 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 MSRB3Q8IXL7 192 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 IQCF2Q8IXL9 164 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 NDNFQ8TB73 568 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 MUL1Q969V5 352 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 ZNF347Q96SE7 839 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 ENPP5Q9UJA9 477 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 SLC45A1Q9Y2W3 748 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 CPQQ9Y646 472 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 ELOVL7A1L3X0 281 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 DYTNA2CJ06 578 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 ZNF623O75123 536 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 TYMPP19971 482 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 LPOP22079 712 aaPredicted RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 FMO3P31513 532 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 SLC6A4P31645 630 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 HPCAL1P37235 193 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 DCTP40126 519 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 MAP2K4P45985 399 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 FPGSQ05932 587 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 VAC14Q08AM6 782 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 SPIDRQ14159 915 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 SIM2Q14190 667 aaPredicted RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 CCDC81Q6ZN84 652 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 MTFMTQ96DP5 389 aaKnown RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 ALPK1Q96QP1 1244 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 SEPT5Q99719 369 aaPredicted RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 MGME1Q9BQP7 344 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 RHNO1Q9BSD3 238 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 APOL5Q9BWW9 433 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 TDRD1Q9BXT4 1180 aaKnown RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 NACA2Q9H009 215 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 MTRRQ9UBK8 725 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 ZBBXA8MT70 800 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 CBX4O00257 560 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 STX7O15400 261 aaKnown RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 INSIG1O15503 277 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 NDUFS2O75306 463 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 HPRP00739 348 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 GJA8P48165 433 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 IFITM3Q01628 133 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 EMX1Q04741 257 aaPredicted RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 TRIM32Q13049 653 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 DNASE1L3Q13609 305 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 RAPSNQ13702 412 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 OR8J3Q8NGG0 315 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 RHBDF1Q96CC6 855 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 RBM4BQ9BQ04 359 aaKnown RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 RBM4Q9BWF3 364 aaKnown RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 GORASP2Q9H8Y8 452 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 SCUBE2Q9NQ36 999 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 PCDHB8Q9UN66 801 aa12.97□□□□□ -0.33
CLN3-210ENST00000563874 ZFP37Q9Y6Q3 630 aaPredicted RBP12.97□□□□□ -0.33
CLN3-210ENST00000563874 F5H5T6 163 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 TTPAP49638 278 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 VBP1P61758 197 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 KCNC4Q03721 635 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 KIAA0040Q15053 153 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 PON2Q15165 354 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 LINGO4Q6UY18 593 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 ANKRD46Q86W74 232 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 LIX1Q8N485 282 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 GIPC2Q8TF65 315 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 BARD1Q99728 777 aaKnown RBP12.96□□□□□ -0.33
CLN3-210ENST00000563874 FEM1AQ9BSK4 669 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 ALOXE3Q9BYJ1 711 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 UBA2Q9UBT2 640 aaPredicted RBP12.96□□□□□ -0.33
CLN3-210ENST00000563874 KLQ9UEF7 1012 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 RAI2Q9Y5P3 530 aa12.96□□□□□ -0.33
CLN3-210ENST00000563874 SERPINA1P01009 418 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 PCMT1P22061 227 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 AKT1P31749 480 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 TRAF3Q13114 568 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 TMEM236Q5W0B7 351 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 SERINC5Q86VE9 423 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 EID3Q8N140 333 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 OR7A2PQ8NGA2 310 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 NETO1Q8TDF5 533 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 GLMNQ92990 594 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms