RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PLGRKTQ9HBL7 147 aa12.42□□□□□ -0.42
SHMT2-229ENST00000557348 FAIMQ9NVQ4 179 aa12.42□□□□□ -0.42
SHMT2-229ENST00000557348 TUBA8Q9NY65 449 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-229ENST00000557348 CDH22Q9UJ99 828 aa12.42□□□□□ -0.42
SHMT2-229ENST00000557348 PTBP2Q9UKA9 531 aaKnown RBP12.42□□□□□ -0.42
SHMT2-229ENST00000557348 FIS1Q9Y3D6 152 aa12.42□□□□□ -0.42
SHMT2-229ENST00000557348 MTF2Q9Y483 593 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-229ENST00000557348 DNAJC15Q9Y5T4 150 aa12.42□□□□□ -0.42
SHMT2-229ENST00000557348 PRSS21Q9Y6M0 314 aa12.42□□□□□ -0.42
SHMT2-229ENST00000557348 PRRT4C9JH25 899 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 E2F3O00716 465 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 KATNA1O75449 491 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 TRMUO75648 421 aaKnown RBP12.41□□□□□ -0.42
SHMT2-229ENST00000557348 APODP05090 189 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 FAM58BPP0C7Q3 252 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 LBPP18428 481 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 AOAHP28039 575 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 TTKP33981 857 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 CPA2P48052 419 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 MRPL19P49406 292 aaKnown RBP12.41□□□□□ -0.42
SHMT2-229ENST00000557348 CDH13P55290 713 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 AP1S2P56377 157 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 HYAL1Q12794 435 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 ZNF234Q14588 700 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 ACOX1Q15067 660 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 TRIP10Q15642 601 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 C9orf64Q5T6V5 341 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 TANGO2Q6ICL3 276 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 OGFOD2Q6N063 350 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 SYCE2Q6PIF2 218 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 LARP4Q71RC2 724 aaKnown RBP eCLIP12.41□□□□□ -0.421e-7■■□□□ 12.3
SHMT2-229ENST00000557348 PARS2Q7L3T8 475 aaKnown RBP12.41□□□□□ -0.42
SHMT2-229ENST00000557348 HSD11B1LQ7Z5J1 315 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 SPATA19Q7Z5L4 167 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 SATL1Q86VE3 508 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 SMYD1Q8NB12 490 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 KYQ8NBH2 561 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 FNDC8Q8TC99 324 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 SLC26A7Q8TE54 656 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 GAB3Q8WWW8 586 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 GLYATL1Q969I3 302 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 NXPE3Q969Y0 559 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 MOCOSQ96EN8 888 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 EGFL8Q99944 293 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 SLC25A23Q9BV35 468 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 HDAC8Q9BY41 377 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 PALMDQ9NP74 551 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 SEMA4BQ9NPR2 832 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-229ENST00000557348 ACSS2Q9NR19 701 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 UTP6Q9NYH9 597 aaKnown RBP12.41□□□□□ -0.42
SHMT2-229ENST00000557348 THAP10Q9P2Z0 257 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-229ENST00000557348 POMPQ9Y244 141 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 ANGPTL3Q9Y5C1 460 aa12.41□□□□□ -0.42
SHMT2-229ENST00000557348 COPG1Q9Y678 874 aaKnown RBP12.41□□□□□ -0.42
SHMT2-229ENST00000557348 KIF26AQ9ULI4 1882 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-229ENST00000557348 TRIOBPQ9H2D6 2365 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 NCF1BA6NI72 391 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-229ENST00000557348 BBIP1A8MTZ0 92 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 NCF1CA8MVU1 366 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-229ENST00000557348 ATG13O75143 517 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 JUNP05412 331 aaKnown RBP12.4□□□□□ -0.42
SHMT2-229ENST00000557348 C8BP07358 591 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 HIST1H2AGP0C0S8 130 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-229ENST00000557348 CDK4P11802 303 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 NCF1P14598 390 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-229ENST00000557348 HIST1H2ADP20671 130 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 CYP2A7P20853 494 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 GJA4P35212 333 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 OPRD1P41143 372 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 CDK9P50750 372 aaKnown RBP12.4□□□□□ -0.42
SHMT2-229ENST00000557348 B4GALNT1Q00973 533 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 PLOD1Q02809 727 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-229ENST00000557348 CCNIQ14094 377 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 ITPRIPL2Q3MIP1 535 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 TMEM52BQ4KMG9 183 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 CLEC6AQ6EIG7 209 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 RBM44Q6ZP01 1051 aaKnown RBP12.4□□□□□ -0.42
SHMT2-229ENST00000557348 Q6ZVL8 140 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 SNX32Q86XE0 403 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 DDIASQ8IXT1 998 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 TSPEARQ8WU66 669 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 DTD2Q96FN9 168 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 ZFYVE19Q96K21 471 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 ZNF514Q96K75 400 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-229ENST00000557348 HIST1H2AHQ96KK5 128 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 PPP1R36Q96LQ0 422 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 COQ10AQ96MF6 247 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 HIST1H2AJQ99878 128 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 H2AFJQ9BTM1 129 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 RIOK2Q9BVS4 552 aaKnown RBP12.4□□□□□ -0.42
SHMT2-229ENST00000557348 MRPL1Q9BYD6 325 aaKnown RBP12.4□□□□□ -0.42
SHMT2-229ENST00000557348 WWOXQ9NZC7 414 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 OPTCQ9UBM4 332 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 IKZF3Q9UKT9 509 aa12.4□□□□□ -0.42
SHMT2-229ENST00000557348 DOCK6Q96HP0 2047 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 SH3PXD2BA1X283 911 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 PSMD12O00232 456 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-229ENST00000557348 AREL1O15033 823 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 ADRB3P13945 408 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 ZNF23P17027 643 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms