RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ESR1P03372 595 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 GSNP06396 782 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 INHBBP09529 407 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 PTGER3P43115 390 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 SLC11A2P49281 568 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 CLCN4P51793 760 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 CHRNB3Q05901 458 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 NFATC3Q12968 1075 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 GPR162Q16538 588 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 FAM98BQ52LJ0 330 aaKnown RBP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 LDLRAP1Q5SW96 308 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 LAIR2Q6ISS4 152 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 FUT10Q6P4F1 479 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF773Q6PK81 442 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 SUSD1Q6UWL2 747 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 Q6ZNX1 250 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 SLC22A15Q8IZD6 547 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF548Q8NEK5 533 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF420Q8TAQ5 688 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 WFDC5Q8TCV5 224 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 GIPC3Q8TF64 312 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 FRS2Q8WU20 508 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 SLC13A3Q8WWT9 602 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 GTF2H4Q92759 462 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 SPATA17Q96L03 361 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 GLT1D1Q96MS3 346 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 GPR63Q9BZJ6 419 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 KLQ9UEF7 1012 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ZNHIT2Q9UHR6 403 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ADGRE2Q9UHX3 823 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 FBXO10Q9UK96 956 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 INVSQ9Y283 1065 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 DHRS7Q9Y394 339 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF711Q9Y462 761 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 CCDC88CQ9P219 2028 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF840PA6NDX5 716 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 H0YAE9 185 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ARNTLO00327 626 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 PRMT5O14744 637 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 AREL1O15033 823 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 MAN1A2O60476 641 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 XYLBO75191 536 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 CLDN11O75508 207 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 PRAMEF1O95521 474 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 MBL2P11226 248 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 CRHBPP24387 322 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 PSMA3P25788 255 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 MAP4P27816 1152 aaKnown RBP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 BMXP51813 675 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 FAM189BP81408 668 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 CYP4F3Q08477 520 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 LAPTM4AQ15012 233 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 PCBP2Q15366 365 aaKnown RBP eCLIP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 DPY19L1Q2PZI1 675 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 PTRHD1Q6GMV3 140 aaKnown RBP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 NCEH1Q6PIU2 408 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 SPESP1Q6UW49 350 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ANKRD46Q86W74 232 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 SERPINA9Q86WD7 417 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 LIX1Q8N485 282 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 CARNMT1Q8N4J0 409 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 SMYD1Q8NB12 490 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 EGFL8Q99944 293 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ADGRE3Q9BY15 652 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 DGCR6LQ9BY27 220 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 FAM118AQ9NWS6 357 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 COMMD8Q9NX08 183 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 LHX3Q9UBR4 397 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 DOLKQ9UPQ8 538 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 SLC30A1Q9Y6M5 507 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 DGKBQ9Y6T7 804 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ILVBLA1L0T0 632 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 LOC730098B7Z3J9 87 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 GSTA4O15217 222 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 TBC1D4O60343 1298 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 TULP3O75386 442 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 SEC14L2O76054 403 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 SLC25A14O95258 325 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ZBTB11O95625 1053 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 NPPAP01160 153 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ALDH2P05091 517 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 JAK1P23458 1154 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 FSHRP23945 695 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ACLYP53396 1101 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 PLA2G16P53816 162 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 PHC1P78364 1004 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 KCNAB2Q13303 367 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 BFSP2Q13515 415 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 MAPKAPK3Q16644 382 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 TCTN1Q2MV58 587 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 GCNT7Q6ZNI0 430 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 THAP5Q7Z6K1 395 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ZDHHC13Q8IUH4 622 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 RGL4Q8IZJ4 473 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ADGRG2Q8IZP9 1017 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 SPARTQ8N0X7 666 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 SLC15A4Q8N697 577 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 CHDHQ8NE62 594 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 SLC47A1Q96FL8 570 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms