RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ANKRD34BA5PLL1 514 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 A8MX80 341 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 SLC6A2P23975 617 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 TIE1P35590 1138 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 OLR1P78380 273 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 SPIBQ01892 262 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 STEAP4Q687X5 459 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 FAAH2Q6GMR7 532 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 HMBOX1Q6NT76 420 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 SYT12Q8IV01 421 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 ADGRG5Q8IZF4 528 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 ITPAQ9BY32 194 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 EVLQ9UI08 416 aaPredicted RBP14.02□□□□□ -0.17
LIMS1-215ENST00000544547 RPS6KA6Q9UK32 745 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 UGT2A1Q9Y4X1 527 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 FABP12A6NFH5 140 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 RAMP2O60895 175 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 ALDH1A2O94788 518 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 C1RP00736 705 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 COX7A2P14406 83 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 CHI3L1P36222 383 aaPredicted RBP14.02□□□□□ -0.17
LIMS1-215ENST00000544547 ALDH6A1Q02252 535 aaKnown RBP14.02□□□□□ -0.17
LIMS1-215ENST00000544547 CLCA4Q14CN2 919 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 RNASE12Q5GAN4 147 aaKnown RBP14.02□□□□□ -0.17
LIMS1-215ENST00000544547 CTU1Q7Z7A3 348 aaKnown RBP14.02□□□□□ -0.17
LIMS1-215ENST00000544547 PHACTR4Q8IZ21 702 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 KCNC2Q96PR1 638 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 RANBP9Q96S59 729 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 PCYT2Q99447 389 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 ZSCAN5AQ9BUG6 496 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 TRIT1Q9H3H1 467 aaKnown RBP14.02□□□□□ -0.17
LIMS1-215ENST00000544547 SERHL2Q9H4I8 314 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 SERHLQ9NQF3 203 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 AGPAT4Q9NRZ5 378 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 PIGVQ9NUD9 493 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 CLN6Q9NWW5 311 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 IL37Q9NZH6 218 aa14.02□□□□□ -0.17
LIMS1-215ENST00000544547 MSI1O43347 362 aaKnown RBP14.01□□□□□ -0.17
LIMS1-215ENST00000544547 PSMA1P25786 263 aaKnown RBP14.01□□□□□ -0.17
LIMS1-215ENST00000544547 OR1E1P30953 314 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 HOXD11P31277 338 aaPredicted RBP14.01□□□□□ -0.17
LIMS1-215ENST00000544547 RASAL3Q86YV0 1011 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 NKAPQ8N5F7 415 aaKnown RBP14.01□□□□□ -0.17
LIMS1-215ENST00000544547 MFSD2AQ8NA29 543 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 C7orf57Q8NEG2 295 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 OR4L1Q8NH43 312 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 RPL3LQ92901 407 aaKnown RBP14.01□□□□□ -0.17
LIMS1-215ENST00000544547 ATP13A3Q9H7F0 1226 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 NKIRAS2Q9NYR9 191 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 SLC25A13Q9UJS0 675 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 CAPN15O75808 1086 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 DNTTP04053 509 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 HNRNPFP52597 415 aaKnown RBP14.01□□□□□ -0.17
LIMS1-215ENST00000544547 ELAVL2Q12926 359 aaKnown RBP14.01□□□□□ -0.17
LIMS1-215ENST00000544547 BTG3Q14201 252 aaPredicted RBP14.01□□□□□ -0.17
LIMS1-215ENST00000544547 SH2D5Q6ZV89 423 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 POF1BQ8WVV4 589 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 SLC13A3Q8WWT9 602 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 CDCA5Q96FF9 252 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 TSPAN18Q96SJ8 248 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 MMP27Q9H306 513 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 SCUBE2Q9NQ36 999 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 MITFO75030 526 aaPredicted RBP14.01□□□□□ -0.17
LIMS1-215ENST00000544547 CNTN5O94779 1100 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 C9P02748 559 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 IL6P05231 212 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 LCKP06239 509 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 PRKAR1AP10644 381 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 MYL12AP19105 171 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 CD40LGP29965 261 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 SHMT2P34897 504 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 DSC2Q02487 901 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 IL18Q14116 193 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 NACC2Q96BF6 587 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 FCRL2Q96LA5 508 aaPredicted RBP14.01□□□□□ -0.17
LIMS1-215ENST00000544547 GMLQ99445 158 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 IL12RB2Q99665 862 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 PRDM16Q9HAZ2 1276 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 CPNE5Q9HCH3 593 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 TMEM181Q9P2C4 612 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 VPS4AQ9UN37 437 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 NOX1Q9Y5S8 564 aa14.01□□□□□ -0.17
LIMS1-215ENST00000544547 MYH9P35579 1960 aaKnown RBP14□□□□□ -0.17
LIMS1-215ENST00000544547 ACOX3O15254 700 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 BMP4P12644 408 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 IL4RP24394 825 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 HTR1BP28222 390 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 GPC1P35052 558 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 PTPN5P54829 565 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 DEFB128Q7Z7B8 93 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 TMEM135Q86UB9 458 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 FAM110BQ8TC76 370 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 BTN2A2Q8WVV5 523 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 SENP8Q96LD8 212 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 SLC30A3Q99726 388 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 ADGRE3Q9BY15 652 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 MROQ9BYG7 248 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 KLHL1Q9NR64 748 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 CACNG4Q9UBN1 327 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 SAMD4AQ9UPU9 718 aaKnown RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms