RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 NDUFS1P28331 727 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 FDFT1P37268 417 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 RPA4Q13156 261 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 KCNAB2Q13303 367 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 ITIH4Q14624 930 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 CCNG2Q16589 344 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 SKIDA1Q1XH10 827 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 ZNF789Q5FWF6 425 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 PRAMEF17Q5VTA0 474 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 FAM199XQ6PEV8 388 aaPredicted RBP13.7□□□□□ -0.22
UPF3A-204ENST00000475218 TMEM135Q86UB9 458 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 ADGRF3Q8IZF5 1079 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 STAMBPL1Q96FJ0 436 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 FERD3LQ96RJ6 166 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 PITPNM3Q9BZ71 974 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 SLC25A18Q9H1K4 315 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 TFB2MQ9H5Q4 396 aaKnown RBP13.7□□□□□ -0.22
UPF3A-204ENST00000475218 XKR8Q9H6D3 395 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 PDE7BQ9NP56 450 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 LZTFL1Q9NQ48 299 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 LHX9Q9NQ69 397 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 RARRES3Q9UL19 164 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 RIMKLBQ9ULI2 386 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 ICKQ9UPZ9 632 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 HEBP2Q9Y5Z4 205 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 UBA6A0AVT1 1052 aaPredicted RBP13.69□□□□□ -0.22
UPF3A-204ENST00000475218 SLC9B1P1A6NJY1 282 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 SUV39H1O43463 412 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 SLC28A2O43868 658 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 ZBTB11O95625 1053 aaPredicted RBP13.69□□□□□ -0.22
UPF3A-204ENST00000475218 ST6GAL1P15907 406 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 NSG1P42857 185 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 ABRQ12979 859 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 PRKG2Q13237 762 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 DEFB109BQ30KR1 87 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 ZNF517Q6ZMY9 492 aaPredicted RBP13.69□□□□□ -0.22
UPF3A-204ENST00000475218 DNAAF3Q8N9W5 541 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 OR5AR1Q8NGP9 310 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 FLVCR1-AS1Q8TAF5 88 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 LKAAEAR1Q8TD35 194 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 LCN9Q8WX39 176 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 TFGQ92734 400 aaPredicted RBP13.69□□□□□ -0.22
UPF3A-204ENST00000475218 CATSPER2Q96P56 530 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 FCRL4Q96PJ5 515 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 HGH1Q9BTY7 390 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 EFHD1Q9BUP0 239 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 ADNPQ9H2P0 1102 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 MARCH4Q9P2E8 410 aaPredicted RBP13.69□□□□□ -0.22
UPF3A-204ENST00000475218 TCAF1Q9Y4C2 921 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 PCDHGA6Q9Y5G7 932 aa13.69□□□□□ -0.22
UPF3A-204ENST00000475218 FLNBO75369 2602 aaKnown RBP13.69□□□□□ -0.22
UPF3A-204ENST00000475218 HEATR9A2RTY3 570 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 SNRNP200O75643 2136 aaKnown RBP13.68□□□□□ -0.22
UPF3A-204ENST00000475218 APRTP07741 180 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 PVRP15151 417 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 TCN2P20062 427 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 ADRA1DP25100 572 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 PRDX3P30048 256 aaKnown RBP13.68□□□□□ -0.22
UPF3A-204ENST00000475218 TUBB4BP68371 445 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 CRADDP78560 199 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 ACY1Q03154 408 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 GPS2Q13227 327 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 DNASE1L3Q13609 305 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 TUBB2AQ13885 445 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 BRD3Q15059 726 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 LCN10Q6JVE6 187 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 C16orf46Q6P387 395 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 DRICH1Q6PGQ1 229 aaPredicted RBP13.68□□□□□ -0.22
UPF3A-204ENST00000475218 PPP1R21Q6ZMI0 780 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 LRRC8AQ8IWT6 810 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 CARFQ8N187 725 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 UBE2Q2Q8WVN8 375 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 TUBB2BQ9BVA1 445 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 SRMSQ9H3Y6 488 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 MVB12BQ9H7P6 319 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 C1GALT1Q9NS00 363 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 PADI1Q9ULC6 663 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 CDYLQ9Y232 598 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 FLNCQ14315 2725 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 LIN7AO14910 233 aaPredicted RBP13.68□□□□□ -0.22
UPF3A-204ENST00000475218 GSTM1P09488 218 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 SFTPCP11686 197 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 CCR10P46092 362 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 KCNJ1P48048 391 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 GSTM4Q03013 218 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 KRT33BQ14525 404 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 AFTPHQ6ULP2 937 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 PRICKLE2Q7Z3G6 844 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 LDB1Q86U70 411 aaPredicted RBP13.68□□□□□ -0.22
UPF3A-204ENST00000475218 BPHLQ86WA6 291 aaPredicted RBP13.68□□□□□ -0.22
UPF3A-204ENST00000475218 AMIGO1Q86WK6 493 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 VRK3Q8IV63 474 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 SGSM3Q96HU1 749 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 TRIM4Q9C037 500 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 KLHL25Q9H0H3 589 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 VPS37BQ9H9H4 285 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 CHRAC1Q9NRG0 131 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 PAK5Q9P286 719 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 TUBD1Q9UJT1 453 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 DRG1Q9Y295 367 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms