RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 RFTN2Q52LD8 501 aaPredicted RBP16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 FKBP9P1Q75LS8 142 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 GALNT13Q8IUC8 556 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 FAM86B1Q8N7N1 296 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 ZNF548Q8NEK5 533 aaPredicted RBP16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 SLC13A3Q8WWT9 602 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 AURKBQ96GD4 344 aaPredicted RBP16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 PPP3R2Q96LZ3 170 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 CDK5RAP1Q96SZ6 601 aaKnown RBP16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 C17orf80Q9BSJ5 609 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 UGT2B28Q9BY64 529 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 ING2Q9H160 280 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 TOR3AQ9H497 397 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 VAPAQ9P0L0 249 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 FNDC3AQ9Y2H6 1198 aaKnown RBP16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 MAGED1Q9Y5V3 778 aaPredicted RBP16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 SLC38A8A6NNN8 435 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 PCNAP12004 261 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 CCNA2P20248 432 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 CRHBPP24387 322 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 EEF1B2P24534 225 aaKnown RBP16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 SGSHP51688 502 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 RAB15P59190 212 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 BNIP3Q12983 259 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 PTPRRQ15256 657 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 NKG7Q16617 165 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 TAS2R42Q7RTR8 314 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 ZDHHC13Q8IUH4 622 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 C8orf59Q8N0T1 100 aaPredicted RBP16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 PJA1Q8NG27 643 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 OR2T12Q8NG77 320 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 GIPC2Q8TF65 315 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 SLC22A17Q8WUG5 538 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 SNX19Q92543 992 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 HDAC2Q92769 488 aaKnown RBP16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 MBOAT4Q96T53 435 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 TTLL2Q9BWV7 592 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 PAIP1Q9H074 479 aaKnown RBP16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 HPS4Q9NQG7 708 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 CHCHD3Q9NX63 227 aaKnown RBP16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 DNAJB9Q9UBS3 223 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 PCDHB1Q9Y5F3 818 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 ZBBXA8MT70 800 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 FFAR2O15552 330 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 ADAM12O43184 909 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 GPR39O43194 453 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 GMNNO75496 209 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 S100BP04271 92 aaPredicted RBP16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 RPL17P18621 184 aaKnown RBP16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 MSH3P20585 1137 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 ATP5C1P36542 298 aaKnown RBP16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 CACNG1Q06432 222 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 MOGQ16653 247 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 TTC23Q5W5X9 447 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 SULT1C3Q6IMI6 304 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 ENPP6Q6UWR7 440 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 XKR5Q6UX68 686 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 RNF165Q6ZSG1 346 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 CHST9Q7L1S5 443 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 RNF168Q8IYW5 571 aaPredicted RBP16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 CARNMT1Q8N4J0 409 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 FBXO22Q8NEZ5 403 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 OR52E4Q8NGH9 312 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 ZNF558Q96NG5 402 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 YME1L1Q96TA2 773 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 FEM1AQ9BSK4 669 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 USE1Q9NZ43 259 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 ZNF510Q9Y2H8 683 aa16.09■□□□□ 0.17
CLCNKA-203ENST00000439316 G3V2T6 193 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 CBX4O00257 560 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 PRMT5O14744 637 aaPredicted RBP16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 RAD51BO15315 384 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 GLUD1P00367 558 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 HNRNPCP07910 306 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 ATF6P18850 670 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 UGT1A1P22309 533 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 UGT1A4P22310 534 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 MAP4P27816 1152 aaKnown RBP16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 GSTM2P28161 218 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 UGT1A3P35503 534 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 UGT1A5P35504 534 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 RPL38P63173 70 aaKnown RBP16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 ARF5P84085 180 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 PPP2R2BQ00005 443 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 CYP4F3Q08477 520 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 EPS8Q12929 822 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 DUSP4Q13115 394 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 SKIV2LQ15477 1246 aaKnown RBP16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 SMU1Q2TAY7 513 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 PLA2G4EQ3MJ16 856 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 KIAA1841Q6NSI8 718 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 NCEH1Q6PIU2 408 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 R3HCC1LQ7Z5L2 792 aaKnown RBP16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 GIPC3Q8TF64 312 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 RAB2BQ8WUD1 216 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 SNRNP27Q8WVK2 155 aaKnown RBP16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 FIG4Q92562 907 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 GTF2H4Q92759 462 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 BADQ92934 168 aa16.08■□□□□ 0.16
CLCNKA-203ENST00000439316 SDCCAG3Q96C92 435 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms