RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 TECPR1Q7Z6L1 1165 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 TBC1D3Q8IZP1 549 aaPredicted RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 CDYL2Q8N8U2 506 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 AVL9Q8NBF6 648 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 OR14C36Q8NHC7 312 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 ASB12Q8WXK4 309 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 PTCD3Q96EY7 689 aaKnown RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 MYADMQ96S97 322 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 DPY30Q9C005 99 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 RSPH9Q9H1X1 276 aaPredicted RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 HPS4Q9NQG7 708 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 FBXL12Q9NXK8 326 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 PCDHGA11Q9Y5H2 935 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 GRXCR2A6NFK2 248 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 WISP3O95389 354 aaPredicted RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 ME2P23368 584 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 GALK1P51570 392 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 TGM3Q08188 693 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 BIRC2Q13490 618 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 PTK2BQ14289 1009 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 PDCD4Q53EL6 469 aaKnown RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 OGFOD2Q6N063 350 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 KIAA1324Q6UXG2 1013 aaKnown RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 HACD2Q6Y1H2 254 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 EGFL6Q8IUX8 553 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 DEFB107AQ8IZN7 70 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 CLDN19Q8N6F1 224 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 DENND6BQ8NEG7 585 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 SETD7Q8WTS6 366 aaKnown RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 COQ10AQ96MF6 247 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 NELL2Q99435 816 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 WDR55Q9H6Y2 383 aaPredicted RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 ZBTB26Q9HCK0 441 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 SPATA7Q9P0W8 599 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 KLQ9UEF7 1012 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 CCDC154A6NI56 674 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 SDHDO14521 159 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 MAP3K7O43318 606 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 ZNF821O75541 412 aaPredicted RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 SLC22A3O75751 556 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 GNAZP19086 355 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 OPRD1P41143 372 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 HSPA7P48741 367 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 CDKN1CP49918 316 aaPredicted RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 RAP1GDS1P52306 607 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 THOP1P52888 689 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 ABRQ12979 859 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 BNIP2Q12982 314 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 CDKN3Q16667 212 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 DPY19L1Q2PZI1 675 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 ASRGL1Q7L266 308 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 FBXO15Q8NCQ5 510 aaPredicted RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 SNX19Q92543 992 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 ARRDC3Q96B67 414 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 OR2AG1Q9H205 316 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 TMEM245Q9H330 911 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 SGK2Q9HBY8 427 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 SUFUQ9UMX1 484 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 PIAS3Q9Y6X2 628 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 COLEC10Q9Y6Z7 277 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 OR2AG2A6NM03 316 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 PIP5K1BO14986 540 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 GRID2O43424 1007 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 MGRN1O60291 552 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 NRP2O60462 931 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 LHCGRP22888 699 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 ASMTP46597 345 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 EMX2Q04743 252 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 MUM1Q2TAK8 710 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 RNF165Q6ZSG1 346 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 NTMT1Q9BV86 223 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 WDR41Q9HAD4 459 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 PTBP2Q9UKA9 531 aaKnown RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 FADS3Q9Y5Q0 445 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 SEC22BO75396 215 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 POP7O75817 140 aaKnown RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 IL12RB1P42701 662 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 CPA2P48052 419 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 GGTA1PQ4G0N0 100 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 DCUN1D3Q8IWE4 304 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 CFAP206Q8IYR0 622 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 SYNPOQ8N3V7 929 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 SCAMP4Q969E2 229 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 MAELQ96JY0 434 aaKnown RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 LRTM1Q9HBL6 345 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 CCDC177Q9NQR7 707 aaPredicted RBP8.22□□□□□ -1.09
USP54-203ENST00000418501 PCDHGB4Q9UN71 923 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 NUMBLQ9Y6R0 609 aa8.22□□□□□ -1.09
USP54-203ENST00000418501 NYNRINQ9P2P1 1898 aaKnown RBP8.21□□□□□ -1.09
USP54-203ENST00000418501 TRIM38O00635 465 aa8.21□□□□□ -1.09
USP54-203ENST00000418501 RASSF9O75901 435 aa8.21□□□□□ -1.09
USP54-203ENST00000418501 OR4F21O95013 312 aa8.21□□□□□ -1.09
USP54-203ENST00000418501 KLF8O95600 359 aaPredicted RBP8.21□□□□□ -1.09
USP54-203ENST00000418501 PCCBP05166 539 aa8.21□□□□□ -1.09
USP54-203ENST00000418501 CAPN1P07384 714 aa8.21□□□□□ -1.09
USP54-203ENST00000418501 IHHQ14623 411 aa8.21□□□□□ -1.09
USP54-203ENST00000418501 ASB11Q8WXH4 323 aa8.21□□□□□ -1.09
USP54-203ENST00000418501 RHBDF1Q96CC6 855 aa8.21□□□□□ -1.09
USP54-203ENST00000418501 CCDC97Q96F63 343 aaPredicted RBP8.21□□□□□ -1.09
USP54-203ENST00000418501 MED8Q96G25 268 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms