RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 DIDO1Q9BTC0 2240 aaKnown RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 GOLGA6L10A0A0M3HER8 536 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 OR5K3A6NET4 321 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 GPR89AB7ZAQ6 455 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 VEGFDO43915 354 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 SCRG1O75711 98 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 GPR89BP0CG08 455 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 PLCL1Q15111 1095 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 PRKD1Q15139 912 aaPredicted RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 OASLQ15646 514 aaKnown RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 PTCHD3Q3KNS1 767 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 PLEKHS1Q5SXH7 462 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 SLC6A19Q695T7 634 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 JMJD6Q6NYC1 403 aaPredicted RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 DARS2Q6PI48 645 aaKnown RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 FAM198BQ6UWH4 519 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 ZNF517Q6ZMY9 492 aaPredicted RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 SYVN1Q86TM6 617 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 TMEM126BQ8IUX1 230 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 D2HGDHQ8N465 521 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 SLC25A41Q8N5S1 370 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 ENDOVQ8N8Q3 282 aaKnown RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 UBXN4Q92575 508 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 MAGOHBQ96A72 148 aaKnown RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 ZNF501Q96CX3 271 aaPredicted RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 VPS35Q96QK1 796 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 FERMT1Q9BQL6 677 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 RAB33BQ9H082 229 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 KLHL25Q9H0H3 589 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 WWP1Q9H0M0 922 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 SLC25A51Q9H1U9 297 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 GLOD4Q9HC38 313 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 FEZ2Q9UHY8 353 aaPredicted RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 ERRFI1Q9UJM3 462 aaPredicted RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 FARSAQ9Y285 508 aaKnown RBP12.57□□□□□ -0.4
LINC00339-202ENST00000416769 CRYBG3Q68DQ2 2970 aa12.57□□□□□ -0.4
LINC00339-202ENST00000416769 CROCCQ5TZA2 2017 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 OR6C74A6NCV1 312 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 CPNE3O75131 537 aaKnown RBP12.56□□□□□ -0.4
LINC00339-202ENST00000416769 CEACAM4O75871 244 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 NDST3O95803 873 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 MT-ND3P03897 115 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 CAPN1P07384 714 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 MTHFD1P11586 935 aaKnown RBP12.56□□□□□ -0.4
LINC00339-202ENST00000416769 PTPN3P26045 913 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 RBL1P28749 1068 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 ZNF789Q5FWF6 425 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 GPRC6AQ5T6X5 926 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 PDPK2PQ6A1A2 396 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 TMEM220Q6QAJ8 160 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 KDELC1Q6UW63 502 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 AMZ2Q86W34 360 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 CDKL3Q8IVW4 592 aaPredicted RBP12.56□□□□□ -0.4
LINC00339-202ENST00000416769 ZBTB2Q8N680 514 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 SPATA4Q8NEY3 305 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 PRR7Q8TB68 274 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 OXNAD1Q96HP4 312 aaPredicted RBP12.56□□□□□ -0.4
LINC00339-202ENST00000416769 RMDN2Q96LZ7 410 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 QKIQ96PU8 341 aaKnown RBP eCLIP12.56□□□□□ -0.4
LINC00339-202ENST00000416769 VAT1Q99536 393 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 FAM118BQ9BPY3 351 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 HRASLS2Q9NWW9 162 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 MAP10Q9P2G4 905 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 ZNF148Q9UQR1 794 aa12.56□□□□□ -0.4
LINC00339-202ENST00000416769 PCDHGA9Q9Y5G4 932 aaKnown RBP12.56□□□□□ -0.4
LINC00339-202ENST00000416769 CELSR2Q9HCU4 2923 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 CNTRLQ7Z7A1 2325 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 SNRNP200O75643 2136 aaKnown RBP12.55□□□□□ -0.4
LINC00339-202ENST00000416769 UBA6A0AVT1 1052 aaPredicted RBP12.55□□□□□ -0.4
LINC00339-202ENST00000416769 TLCD2A6NGC4 264 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 SLC9B1P1A6NJY1 282 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 PHF2O75151 1096 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 RECKO95980 971 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 PVRP15151 417 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 NFKB1P19838 968 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 RORAP35398 523 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 COILP38432 576 aaPredicted RBP12.55□□□□□ -0.4
LINC00339-202ENST00000416769 DCTP40126 519 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 HALP42357 657 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 FNTAP49354 379 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 ARL4DP49703 201 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 WNT3AP56704 352 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 RPS15P62841 145 aaKnown RBP12.55□□□□□ -0.4
LINC00339-202ENST00000416769 TUBB4BP68371 445 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 HSD11B2P80365 405 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 ACY1Q03154 408 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 DMPKQ09013 629 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 WASHC5Q12768 1159 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 OLIG2Q13516 323 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 SNX1Q13596 522 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 ATP1A4Q13733 1029 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 GTF2H3Q13889 308 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 TEX44Q53QW1 395 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 SIRPB2Q5JXA9 342 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 FNBP1LQ5T0N5 605 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 CCDC137Q6PK04 289 aaKnown RBP12.55□□□□□ -0.4
LINC00339-202ENST00000416769 RBM12BQ8IXT5 1001 aaKnown RBP12.55□□□□□ -0.4
LINC00339-202ENST00000416769 CEP112Q8N8E3 955 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 MNS1Q8NEH6 495 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 OR1L3Q8NH93 324 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms