RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 THAP6Q8TBB0 222 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 IFT27Q9BW83 186 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 TAPBPLQ9BX59 468 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 OSER1Q9NX31 292 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 ROBO3Q96MS0 1386 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 BPNT1O95861 308 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 PVALBP20472 110 aaPredicted RBP13.78□□□□□ -0.2
COL4A3-202ENST00000396578 MPP1Q00013 466 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 PRKD1Q15139 912 aaPredicted RBP13.78□□□□□ -0.2
COL4A3-202ENST00000396578 VMACQ2NL98 169 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 IQCKQ8N0W5 287 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 TRIM43Q96BQ3 446 aaPredicted RBP13.78□□□□□ -0.2
COL4A3-202ENST00000396578 MTMR10Q9NXD2 777 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 RIMKLBQ9ULI2 386 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 PTPRUQ92729 1446 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 NEDD8-MDP1E9PL57 170 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 CCRL2O00421 344 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 ACOX3O15254 700 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 ATP6V1G1O75348 118 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 UBA1P22314 1058 aaKnown RBP13.78□□□□□ -0.2
COL4A3-202ENST00000396578 FMO3P31513 532 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 PPM1AP35813 382 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 C12orf50Q8NA57 414 aaPredicted RBP13.78□□□□□ -0.2
COL4A3-202ENST00000396578 OR2L2Q8NH16 312 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 BRD7Q9NPI1 651 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 REXO2Q9Y3B8 237 aaKnown RBP13.78□□□□□ -0.2
COL4A3-202ENST00000396578 PCDHGB5Q9Y5G0 923 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 HSPA7P48741 367 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 MECP2P51608 486 aaKnown RBP13.78□□□□□ -0.2
COL4A3-202ENST00000396578 CFAP206Q8IYR0 622 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 LRRC52Q8N7C0 313 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 OR2AJ1Q8NGZ0 328 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 OR5K1Q8NHB7 308 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 NSMCE3Q96MG7 304 aa13.78□□□□□ -0.2
COL4A3-202ENST00000396578 INPP4AQ96PE3 977 aaPredicted RBP13.78□□□□□ -0.2
COL4A3-202ENST00000396578 TTC34A8MYJ7 566 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 CCNCP24863 283 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 PUM1Q14671 1186 aaKnown RBP eCLIP13.77□□□□□ -0.2
COL4A3-202ENST00000396578 GPR21Q99679 349 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 ACSS2Q9NR19 701 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 A0A1B0GVC2 190 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 NOL4O94818 638 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 LHCGRP22888 699 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 CLCN7P51798 805 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 PRKCDQ05655 676 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 SLC25A25Q6KCM7 469 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 KLHDC10Q6PID8 442 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 CIR1Q86X95 450 aaPredicted RBP13.77□□□□□ -0.2
COL4A3-202ENST00000396578 TOP6BLQ8N6T0 577 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 NUDT15Q9NV35 164 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 PCDHGB1Q9Y5G3 927 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 NPHS1O60500 1241 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 IFNA21P01568 189 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 CSN2P05814 226 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 GNAO1P09471 354 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 HNRNPH3P31942 346 aaKnown RBP13.77□□□□□ -0.2
COL4A3-202ENST00000396578 MAN2A2P49641 1150 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 RGS19P49795 217 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 GFOD2Q3B7J2 385 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 TMEM214Q6NUQ4 689 aaKnown RBP13.77□□□□□ -0.2
COL4A3-202ENST00000396578 MAFIPQ8WZ33 124 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 ZSCAN5AQ9BUG6 496 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 IRF2BPLQ9H1B7 796 aa13.77□□□□□ -0.2
COL4A3-202ENST00000396578 SSU72Q9NP77 194 aaKnown RBP13.77□□□□□ -0.2
COL4A3-202ENST00000396578 TRIM64A6NGJ6 449 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 I3L521 148 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 CLDN11O75508 207 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 ITGA10O75578 1167 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 ZNF20P17024 532 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 ALAS2P22557 587 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 HSD3B2P26439 372 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 MAB21L1Q13394 359 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 FAM174BQ3ZCQ3 159 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 COLEC12Q5KU26 742 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 PCDH19Q8TAB3 1148 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 CSPG4P5Q96PW8 444 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 TBC1D3DA0A087WVF3 549 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 TBC1D3IA0A087WXS9 549 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 TBC1D3EA0A087X179 549 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 TBC1D3KA0A087X1G2 549 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 TBC1D3FA6NER0 549 aaPredicted RBP13.77□□□□□ -0.21
COL4A3-202ENST00000396578 TBC1D3LB9A6J9 549 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 ADH1AP07327 375 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 TBC1D3HP0C7X1 549 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 PRPS2P11908 318 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 CLCN4P51793 760 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 AFF1P51825 1210 aaKnown RBP13.77□□□□□ -0.21
COL4A3-202ENST00000396578 C9orf57Q5W0N0 161 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 TBC1D3GQ6DHY5 549 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 TBC1D3CQ6IPX1 549 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 INTS5Q6P9B9 1019 aaKnown RBP13.77□□□□□ -0.21
COL4A3-202ENST00000396578 FAM129CQ86XR2 697 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 TBC1D3Q8IZP1 549 aaPredicted RBP13.77□□□□□ -0.21
COL4A3-202ENST00000396578 FSTL5Q8N475 847 aaPredicted RBP13.77□□□□□ -0.21
COL4A3-202ENST00000396578 ZMIZ2Q8NF64 920 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 CROCCQ5TZA2 2017 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 UBXN7O94888 489 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 CYP11A1P05108 521 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 SMIM10L2AP0DMW4 78 aa13.77□□□□□ -0.21
COL4A3-202ENST00000396578 SMIM10L2BP0DMW5 78 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms