RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 ISM1B1AKI9 464 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 GRID2O43424 1007 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 CLN5O75503 358 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 SCELO95171 688 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 HRGP04196 525 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 RPS3P23396 243 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP49-203ENST00000394253 EIF2B1Q14232 305 aaKnown RBP13.22□□□□□ -0.29
USP49-203ENST00000394253 PPP1R15BQ5SWA1 713 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 PHTF2Q8N3S3 785 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 SLC44A5Q8NCS7 719 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 C8orf48Q96LL4 319 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ATG10Q9H0Y0 220 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ARL8BQ9NVJ2 186 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 DDX43Q9NXZ2 648 aaKnown RBP13.22□□□□□ -0.29
USP49-203ENST00000394253 MALT1Q9UDY8 824 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 DRD4P21917 467 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 RAB27AP51159 221 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 PHYKPLQ8IUZ5 450 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 SAMD10Q9BYL1 202 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 TAS2R43P59537 309 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 SPOCK1Q08629 439 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 GRM3Q14832 879 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 PGM2L1Q6PCE3 622 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ZNF676Q8N7Q3 588 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 GALNT11Q8NCW6 608 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 MOAP1Q96BY2 351 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 POPDC2Q9HBU9 364 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 PCDHGC3Q9UN70 934 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ATP6V1G2-DDX39BF2Z307 99 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ARL6IP5O75915 188 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 NUDT17P0C025 328 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 CDH1P12830 882 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ITPKAP23677 461 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 CBX2Q14781 532 aaPredicted RBP13.22□□□□□ -0.29
USP49-203ENST00000394253 SEC23AQ15436 765 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 GFOD2Q3B7J2 385 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 C3orf58Q8NDZ4 430 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 PEX13Q92968 403 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 MAELQ96JY0 434 aaKnown RBP13.22□□□□□ -0.29
USP49-203ENST00000394253 UCK2Q9BZX2 261 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 PARPBPQ9NWS1 579 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 CMAHPQ9Y471 501 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 C17orf113A0A1B0GUU1 675 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 TSPAN3O60637 253 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 LILRB5O75023 590 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 MICAL2O94851 1124 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 C8BP07358 591 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 FADDQ13158 208 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 LAPTM5Q13571 262 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 CPSF6Q16630 551 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP49-203ENST00000394253 LPCAT4Q643R3 524 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 LINC00471Q8N535 108 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 OR4C15Q8NGM1 316 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 DNAJB8Q8NHS0 232 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 METTL21AQ8WXB1 218 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 SH2D3AQ9BRG2 576 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 COLEC10Q9Y6Z7 277 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 A0A1W2PRQ8 180 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ATG12O94817 140 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 WDPCPO95876 746 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 YBX3P16989 372 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP49-203ENST00000394253 PSMB4P28070 264 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ZNF674Q2M3X9 581 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 MOB1BQ7L9L4 216 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ZNF571Q7Z3V5 609 aaPredicted RBP13.22□□□□□ -0.29
USP49-203ENST00000394253 CHST13Q8NET6 341 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 OR5T2Q8NGG2 359 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 CELF6Q96J87 481 aaKnown RBP13.22□□□□□ -0.29
USP49-203ENST00000394253 MRPL45Q9BRJ2 306 aaKnown RBP13.22□□□□□ -0.29
USP49-203ENST00000394253 TMEM185BQ9H7F4 350 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 SH2B3Q9UQQ2 575 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ASF1AQ9Y294 204 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 NOX1Q9Y5S8 564 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 UNC13CQ8NB66 2214 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 HEATR5BQ9P2D3 2071 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ZNF705FA8MVS1 300 aaPredicted RBP13.22□□□□□ -0.29
USP49-203ENST00000394253 MFSD11O43934 449 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 RFPL1O75677 317 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ZNF705DP0CH99 300 aaPredicted RBP13.22□□□□□ -0.29
USP49-203ENST00000394253 ZNF705BP0CI00 300 aaPredicted RBP13.22□□□□□ -0.29
USP49-203ENST00000394253 UBQLNLQ8IYU4 475 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 TMEM9Q9P0T7 183 aa13.22□□□□□ -0.29
USP49-203ENST00000394253 ZNF490Q9ULM2 529 aaPredicted RBP13.22□□□□□ -0.29
USP49-203ENST00000394253 FAM86B2P0C5J1 330 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 RPL26P61254 145 aaKnown RBP13.21□□□□□ -0.29
USP49-203ENST00000394253 KCTD9Q7L273 389 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 NCSTNQ92542 709 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 PPP4R1LQ9P1A2 415 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 SCN9AQ15858 1988 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 ZFC3H1O60293 1989 aaKnown RBP13.21□□□□□ -0.29
USP49-203ENST00000394253 LRRN3E7EW58 273 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 NEDD8-MDP1E9PL57 170 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 F5H0A9 414 aaPredicted RBP13.21□□□□□ -0.29
USP49-203ENST00000394253 BHLHE40O14503 412 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 PEX14O75381 377 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 HOXB9P17482 250 aaPredicted RBP13.21□□□□□ -0.29
USP49-203ENST00000394253 PRMT2P55345 433 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 TAS2R50P59544 299 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 C14orf28Q4W4Y0 310 aa13.21□□□□□ -0.29
USP49-203ENST00000394253 NIPAL3Q6P499 406 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms