RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 RAB3IL1Q8TBN0 382 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 GAB3Q8WWW8 586 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 MOCOSQ96EN8 888 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 GATA5Q9BWX5 397 aaPredicted RBP19.45■□□□□ 0.7
CLN3-205ENST00000359984 PARVBQ9HBI1 364 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 ACSS2Q9NR19 701 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 CD274Q9NZQ7 290 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 PDE10AQ9Y233 779 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 SLC16A5O15375 505 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 KLK8O60259 260 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 KCNJ13O60928 360 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 PSIP1O75475 530 aaKnown RBP19.44■□□□□ 0.7
CLN3-205ENST00000359984 SERPINE1P05121 402 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 VIMP08670 466 aaKnown RBP19.44■□□□□ 0.7
CLN3-205ENST00000359984 ACADLP28330 430 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 NAGLUP54802 743 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 STX3Q13277 289 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 SP140Q13342 867 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 ATG16L1Q676U5 607 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 LRRC34Q8IZ02 419 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 RGL4Q8IZJ4 473 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 FBXO39Q8N4B4 442 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 SPDYE1Q8NFV5 336 aaPredicted RBP19.44■□□□□ 0.7
CLN3-205ENST00000359984 SREK1Q8WXA9 508 aaKnown RBP19.44■□□□□ 0.7
CLN3-205ENST00000359984 TMEM237Q96Q45 408 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 EPN3Q9H201 632 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 OSGEPL1Q9H4B0 414 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 CAAP1Q9H8G2 361 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 RDH14Q9HBH5 336 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 SLCO1B3Q9NPD5 702 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 NUDT4Q9NZJ9 180 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 ACSL5Q9ULC5 683 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 DGKBQ9Y6T7 804 aa19.44■□□□□ 0.7
CLN3-205ENST00000359984 GMNCA6NCL1 334 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 FFAR2O15552 330 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 AVPR2P30518 371 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 WDR45BQ5MNZ6 344 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 IQCHQ86VS3 1027 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 DCP2Q8IU60 420 aaKnown RBP19.43■□□□□ 0.7
CLN3-205ENST00000359984 CHMP6Q96FZ7 201 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 TMEM168Q9H0V1 697 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 ZNF395Q9H8N7 513 aaPredicted RBP19.43■□□□□ 0.7
CLN3-205ENST00000359984 PSMD13Q9UNM6 376 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 HRO43593 1189 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 SNX2O60749 519 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 RASGRP1O95267 797 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 GUCA1CO95843 209 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 ENO2P09104 434 aaPredicted RBP19.43■□□□□ 0.7
CLN3-205ENST00000359984 IMPDH1P20839 514 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 GRK2P25098 689 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 RPL10P27635 214 aaKnown RBP19.43■□□□□ 0.7
CLN3-205ENST00000359984 RPIAP49247 311 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 ASPHQ12797 758 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 OVGP1Q12889 678 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 PDZD3Q86UT5 571 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 BCAS4Q8TDM0 211 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 FOPNLQ96NB1 174 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 ZDHHC5Q9C0B5 715 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 C20orf27Q9GZN8 174 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 KLF15Q9UIH9 416 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 TMCO1Q9UM00 188 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 CEP192Q8TEP8 1941 aa19.43■□□□□ 0.7
CLN3-205ENST00000359984 LRRC14BA6NHZ5 514 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 ARHGEF33A8MVX0 844 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 TLR4O00206 839 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 ITM2AO43736 263 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 SNNO75324 88 aaPredicted RBP19.42■□□□□ 0.7
CLN3-205ENST00000359984 H2AFYO75367 372 aaKnown RBP19.42■□□□□ 0.7
CLN3-205ENST00000359984 TNFP01375 233 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 CYP2A7P20853 494 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 MAPK9P45984 424 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 ALDH18A1P54886 795 aaKnown RBP19.42■□□□□ 0.7
CLN3-205ENST00000359984 CTBSQ01459 385 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 ZNF542PQ5EBM4 170 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 FBXO48Q5FWF7 155 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 PMS2CLQ68D20 193 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 MBOAT1Q6ZNC8 495 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 FAM47EQ6ZV65 393 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 C11orf74Q86VG3 221 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 CCNYL1Q8N7R7 359 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 PDPRQ8NCN5 879 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 CCL4L1Q8NHW4 92 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 NELL1Q92832 810 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 WWP1Q9H0M0 922 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 TCEAL2Q9H3H9 227 aaPredicted RBP19.42■□□□□ 0.7
CLN3-205ENST00000359984 WDR37Q9Y2I8 494 aa19.42■□□□□ 0.7
CLN3-205ENST00000359984 SIX3O95343 332 aaPredicted RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 CATP04040 527 aaKnown RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 S100BP04271 92 aaPredicted RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 IDSP22304 550 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 ITPKAP23677 461 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 ARRB2P32121 409 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 AGTR2P50052 363 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 CLCNKAP51800 687 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 HERVK_113P63132 956 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 TCEA2Q15560 299 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 EEF1AKMT2Q5JPI9 291 aaKnown RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 ZNF678Q5SXM1 525 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 CAPRIN2Q6IMN6 1127 aaKnown RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 ATG14Q6ZNE5 492 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms