RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 TTKP33981 857 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 MMP12P39900 470 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 ESRRGP62508 458 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 MYBPC1Q00872 1141 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 TRIM25Q14258 630 aaKnown RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 UNC50Q53HI1 259 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 TXNDC11Q6PKC3 985 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 PARM1Q6UWI2 310 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 MTSS1LQ765P7 747 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 PARS2Q7L3T8 475 aaKnown RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 GPSM1Q86YR5 675 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 NRSN1Q8IZ57 195 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 FBXO39Q8N4B4 442 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 PACRGLQ8N7B6 248 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 FGF14Q92915 247 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 PPP1R16AQ96I34 528 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 OR52B2Q96RD2 323 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 GSTO2Q9H4Y5 243 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 SMOXQ9NWM0 555 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 THAP10Q9P2Z0 257 aaPredicted RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 SARDHQ9UL12 918 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 MYRFQ9Y2G1 1151 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 AP4S1Q9Y587 144 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 NPEPPSL1A6NEC2 478 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 H0Y858 1186 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 STX16-NPEPL1H3BU86 382 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 STX16O14662 325 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 ACOT8O14734 319 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 GRID2O43424 1007 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 SORBS2O94875 1100 aaKnown RBP12.59□□□□□ -0.39
CLK3-201ENST00000345005 OR56A5P0C7T3 313 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 HNRNPLP14866 589 aaKnown RBP eCLIP12.59□□□□□ -0.39
CLK3-201ENST00000345005 XRCC1P18887 633 aaPredicted RBP12.59□□□□□ -0.39
CLK3-201ENST00000345005 RHDQ02161 417 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 DLX2Q07687 328 aaPredicted RBP12.59□□□□□ -0.39
CLK3-201ENST00000345005 ELP6Q0PNE2 266 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 RALGDSQ12967 914 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 PTK2BQ14289 1009 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 TTLL9Q3SXZ7 439 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 POM121L1PQ3SYA9 428 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 SPATS1Q496A3 300 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 GPRC6AQ5T6X5 926 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 LIPIQ6XZB0 460 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 Q6ZVL8 140 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 TECPR1Q7Z6L1 1165 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 TRAM1L1Q8N609 369 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 ZBTB2Q8N680 514 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 TMEM102Q8N9M5 508 aaPredicted RBP12.59□□□□□ -0.39
CLK3-201ENST00000345005 SMYD1Q8NB12 490 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 GOLM1Q8NBJ4 401 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 RCN3Q96D15 328 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 FAM129BQ96TA1 746 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 CCT7Q99832 543 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 ZSCAN5AQ9BUG6 496 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 GRIP2Q9C0E4 1043 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 PREBQ9HCU5 417 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 CLDND1Q9NY35 253 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 CD84Q9UIB8 345 aa12.59□□□□□ -0.39
CLK3-201ENST00000345005 CKAP5Q14008 2032 aa12.58□□□□□ -0.39
CLK3-201ENST00000345005 TMEM221A6NGB7 291 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CFLARO15519 480 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 KLK8O60259 260 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 BMP10O95393 424 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 ELFN1P0C7U0 828 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CBSLP0DN79 551 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 ENO3P13929 434 aaPredicted RBP12.58□□□□□ -0.4
CLK3-201ENST00000345005 ITGB6P18564 788 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CDH2P19022 906 aaPredicted RBP12.58□□□□□ -0.4
CLK3-201ENST00000345005 SLC7A1P30825 629 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CBSP35520 551 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 ALDH3B2P48448 385 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 ACADVLP49748 655 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 PHEXP78562 749 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 IYDQ6PHW0 289 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 DHRS4L2Q6PKH6 230 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 HACD2Q6Y1H2 254 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 ADAMTSL2Q86TH1 951 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CUZD1Q86UP6 607 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 SFTPA1Q8IWL2 248 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 MYO1HQ8N1T3 1032 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 METTL25Q8N6Q8 603 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 ZBTB8BQ8NAP8 495 aaPredicted RBP12.58□□□□□ -0.4
CLK3-201ENST00000345005 MAPK15Q8TD08 544 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CCDC97Q96F63 343 aaPredicted RBP12.58□□□□□ -0.4
CLK3-201ENST00000345005 MAELQ96JY0 434 aaKnown RBP12.58□□□□□ -0.4
CLK3-201ENST00000345005 NECTIN4Q96NY8 510 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 UHRF1Q96T88 793 aaPredicted RBP12.58□□□□□ -0.4
CLK3-201ENST00000345005 PKP2Q99959 881 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 SLX1AQ9BQ83 275 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 DYRK4Q9NR20 520 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 KCTD5Q9NXV2 234 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 IKZF3Q9UKT9 509 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CEPT1Q9Y6K0 416 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CFAP99D6REC4 459 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 C1QTNF3-AMACRE9PGA6 284 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 NPC1O15118 1278 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 SNX2O60749 519 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 C7P10643 843 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CDK4P11802 303 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 ATP1B2P14415 290 aaPredicted RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms