RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 NKX2-3Q8TAU0 364 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 SLC38A4Q969I6 547 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 TMEM246Q9BRR3 403 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 IFT27Q9BW83 186 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 DDX4Q9NQI0 724 aaKnown RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 TVP23BQ9NYZ1 205 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 EIF2B4Q9UI10 523 aaKnown RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 CYP3A7-CYP3A51PA0A087WV96 503 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 IQCF5A8MTL0 148 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 SLC22A1O15245 554 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 FFAR2O15552 330 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 CYP3A4P08684 503 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 TACSTD2P09758 323 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 CYP3A7P24462 503 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 SLC26A5P58743 744 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 AUHQ13825 339 aaKnown RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 NPLOC4Q8TAT6 608 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 LPGAT1Q92604 370 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 WDR55Q9H6Y2 383 aaPredicted RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 PCTPQ9UKL6 214 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 A0A1W2PRQ8 180 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 TOXO94900 526 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 MAXP61244 160 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 SLC18A2Q05940 514 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 ASTE1Q2TB18 679 aaPredicted RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 ZNF311Q5JNZ3 666 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 TMEM214Q6NUQ4 689 aaKnown RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 TMPRSS9Q7Z410 1059 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 CLP1Q92989 425 aaKnown RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 TLR10Q9BXR5 811 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 C14orf105Q9NVL8 296 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 SEC14L4Q9UDX3 406 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 CFL2Q9Y281 166 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 PCDHGA6Q9Y5G7 932 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 LOXHD1Q8IVV2 1947 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 ATP10AO60312 1499 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 F8VP50 259 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 XYLBO75191 536 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 HTR1BP28222 390 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 HTR2AP28223 471 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 CHKAP35790 457 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 CDKN2CP42773 168 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 MINDY4Q4G0A6 757 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 RFWD3Q6PCD5 774 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 OR10A6Q8NH74 314 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 ASPNQ9BXN1 380 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 POU2F3Q9UKI9 436 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 A0A0U1RQK1 487 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 RPP14O95059 124 aaKnown RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 ZBTB48P10074 688 aaPredicted RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 EPCAMP16422 314 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 NIPAL4Q0D2K0 466 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 CBX2Q14781 532 aaPredicted RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 RAB39AQ14964 217 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 ANKDD1AQ495B1 522 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 ZDHHC21Q8IVQ6 265 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 KCT2Q8NC54 265 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 FCGR1BQ92637 280 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 COQ10BQ9H8M1 238 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 TM7SF2O76062 418 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 ITPKAP23677 461 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 MPSTP25325 297 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 GABRB2P47870 512 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 NKX6-1P78426 367 aaPredicted RBP12.65□□□□□ -0.38
USP47-202ENST00000339865 KCTD19Q17RG1 926 aaPredicted RBP12.65□□□□□ -0.38
USP47-202ENST00000339865 VASH1Q7L8A9 365 aaPredicted RBP12.65□□□□□ -0.38
USP47-202ENST00000339865 ERI1Q8IV48 349 aaKnown RBP12.65□□□□□ -0.38
USP47-202ENST00000339865 SLC44A3Q8N4M1 653 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 PIGBQ92521 554 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 EBF3Q9H4W6 596 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 RFX7Q2KHR2 1363 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 RNF151Q2KHN1 245 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 KIAA1161Q6NSJ0 714 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 ZNF529Q6P280 563 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 HSDL2Q6YN16 418 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 RDH11Q8TC12 318 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 TAS2R10Q9NYW0 307 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 SPATA7Q9P0W8 599 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 USP20Q9Y2K6 914 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 PCDHGB7Q9Y5F8 929 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 HOXA2O43364 376 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 ITGA10O75578 1167 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 GADD45GO95257 159 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 RENP00797 406 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 ITGAVP06756 1048 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 ZNF143P52747 638 aaPredicted RBP12.65□□□□□ -0.38
USP47-202ENST00000339865 CASP6P55212 293 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 CDH15P55291 814 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 DCST2Q5T1A1 773 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 LRRN4Q8WUT4 740 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 OVCA2Q8WZ82 227 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 GAD1Q99259 594 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 CLASP1Q7Z460 1538 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 ZNF705GA8MUZ8 300 aaPredicted RBP12.65□□□□□ -0.38
USP47-202ENST00000339865 TSPAN15O95858 294 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 HERV-K104P61576 105 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 SLC6A3Q01959 620 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 FOXM1Q08050 763 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 OR4L1Q8NH43 312 aa12.65□□□□□ -0.38
USP47-202ENST00000339865 CPNE2Q96FN4 548 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms