RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CARS2Q9HA77 564 aaKnown RBP15.03■□□□□ -0
UPF1-204ENST00000596842 PARVBQ9HBI1 364 aa15.03■□□□□ -0
UPF1-204ENST00000596842 INIPQ9NRY2 104 aa15.03■□□□□ -0
UPF1-204ENST00000596842 UBA2Q9UBT2 640 aaPredicted RBP15.03■□□□□ -0
UPF1-204ENST00000596842 PCDHB9Q9Y5E1 797 aa15.03■□□□□ -0
UPF1-204ENST00000596842 EIF3FO00303 357 aaPredicted RBP15.03■□□□□ -0
UPF1-204ENST00000596842 EEDO75530 441 aaKnown RBP15.03■□□□□ -0
UPF1-204ENST00000596842 PSMB9P28065 219 aa15.03■□□□□ -0
UPF1-204ENST00000596842 FMO3P31513 532 aa15.03■□□□□ -0
UPF1-204ENST00000596842 DUSP4Q13115 394 aa15.03■□□□□ -0
UPF1-204ENST00000596842 CPSF6Q16630 551 aaKnown RBP eCLIP15.03■□□□□ -0
UPF1-204ENST00000596842 SPANXN4Q5MJ08 99 aa15.03■□□□□ -0
UPF1-204ENST00000596842 FAAH2Q6GMR7 532 aa15.03■□□□□ -0
UPF1-204ENST00000596842 SULT1C3Q6IMI6 304 aa15.03■□□□□ -0
UPF1-204ENST00000596842 RHEBL1Q8TAI7 183 aa15.03■□□□□ -0
UPF1-204ENST00000596842 SLC47A1Q96FL8 570 aa15.03■□□□□ -0
UPF1-204ENST00000596842 DERL2Q9GZP9 239 aa15.03■□□□□ -0
UPF1-204ENST00000596842 EPS8L2Q9H6S3 715 aa15.03■□□□□ -0
UPF1-204ENST00000596842 ACTR8Q9H981 624 aa15.03■□□□□ -0
UPF1-204ENST00000596842 PRDM8Q9NQV8 689 aa15.03■□□□□ -0
UPF1-204ENST00000596842 TRMT13Q9NUP7 481 aaKnown RBP15.03■□□□□ -0
UPF1-204ENST00000596842 NYNRINQ9P2P1 1898 aaKnown RBP15.02■□□□□ -0
UPF1-204ENST00000596842 FAM234BA2RU67 622 aa15.02■□□□□ -0
UPF1-204ENST00000596842 FUOMA2VDF0 154 aa15.02■□□□□ -0
UPF1-204ENST00000596842 VPS4BO75351 444 aa15.02■□□□□ -0
UPF1-204ENST00000596842 DDX5P17844 614 aaKnown RBP15.02■□□□□ -0
UPF1-204ENST00000596842 MLLT10P55197 1068 aa15.02■□□□□ -0
UPF1-204ENST00000596842 ZNF773Q6PK81 442 aa15.02■□□□□ -0
UPF1-204ENST00000596842 MBOAT1Q6ZNC8 495 aa15.02■□□□□ -0
UPF1-204ENST00000596842 DCDC5Q6ZRR9 648 aa15.02■□□□□ -0
UPF1-204ENST00000596842 TANKQ92844 425 aa15.02■□□□□ -0
UPF1-204ENST00000596842 DPY30Q9C005 99 aa15.02■□□□□ -0
UPF1-204ENST00000596842 FBXO44Q9H4M3 255 aa15.02■□□□□ -0
UPF1-204ENST00000596842 POLE4Q9NR33 117 aa15.02■□□□□ -0
UPF1-204ENST00000596842 MED16Q9Y2X0 877 aa15.02■□□□□ -0
UPF1-204ENST00000596842 TSC2P49815 1807 aa15.02■□□□□ -0
UPF1-204ENST00000596842 A0A1W2PQ67 120 aa15.02■□□□□ -0
UPF1-204ENST00000596842 MITFO75030 526 aaPredicted RBP15.02■□□□□ -0
UPF1-204ENST00000596842 CNOT3O75175 753 aaKnown RBP15.02■□□□□ -0
UPF1-204ENST00000596842 CELF2O95319 508 aaKnown RBP15.02■□□□□ -0
UPF1-204ENST00000596842 TACR2P21452 398 aa15.02■□□□□ -0
UPF1-204ENST00000596842 DCKP27707 260 aa15.02■□□□□ -0
UPF1-204ENST00000596842 TTKP33981 857 aa15.02■□□□□ -0
UPF1-204ENST00000596842 ALDH3A2P51648 485 aa15.02■□□□□ -0
UPF1-204ENST00000596842 SPCS2Q15005 226 aa15.02■□□□□ -0
UPF1-204ENST00000596842 PGS1Q32NB8 556 aa15.02■□□□□ -0
UPF1-204ENST00000596842 AFTPHQ6ULP2 937 aa15.02■□□□□ -0
UPF1-204ENST00000596842 NKAPQ8N5F7 415 aaKnown RBP15.02■□□□□ -0
UPF1-204ENST00000596842 IKZF5Q9H5V7 419 aa15.02■□□□□ -0
UPF1-204ENST00000596842 NTN4Q9HB63 628 aa15.02■□□□□ -0
UPF1-204ENST00000596842 PRDM5Q9NQX1 630 aaPredicted RBP15.02■□□□□ -0
UPF1-204ENST00000596842 GKN1Q9NS71 199 aa15.02■□□□□ -0
UPF1-204ENST00000596842 WWOXQ9NZC7 414 aa15.02■□□□□ -0
UPF1-204ENST00000596842 HCSTQ9UBK5 93 aa15.02■□□□□ -0
UPF1-204ENST00000596842 PDE10AQ9Y233 779 aa15.02■□□□□ -0
UPF1-204ENST00000596842 TMED5Q9Y3A6 229 aa15.02■□□□□ -0
UPF1-204ENST00000596842 M0R3G1 203 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 ALPIP09923 528 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 CDH1P12830 882 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 SLC26A3P40879 764 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 TPTEP56180 551 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 EEFSECP57772 596 aaKnown RBP15.02□□□□□ -0.01
UPF1-204ENST00000596842 DNASE1L3Q13609 305 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 ARHGEF7Q14155 803 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 SMUG1Q53HV7 270 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 CITED4Q96RK1 184 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 FEM1AQ9BSK4 669 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 FUNDC2Q9BWH2 189 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 HPS4Q9NQG7 708 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 RASSF1Q9NS23 344 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 MAGEL2Q9UJ55 1249 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 SATB2Q9UPW6 733 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 PCDHB5Q9Y5E4 795 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 RAI2Q9Y5P3 530 aa15.02□□□□□ -0.01
UPF1-204ENST00000596842 ENO2P09104 434 aaPredicted RBP15.01□□□□□ -0.01
UPF1-204ENST00000596842 RAP2AP10114 183 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 MBL2P11226 248 aaPredicted RBP15.01□□□□□ -0.01
UPF1-204ENST00000596842 OPRL1P41146 370 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 PDCD4Q53EL6 469 aaKnown RBP15.01□□□□□ -0.01
UPF1-204ENST00000596842 SETMARQ53H47 684 aaPredicted RBP15.01□□□□□ -0.01
UPF1-204ENST00000596842 AFMIDQ63HM1 303 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 CD300LGQ6UXG3 332 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 PROSER1Q86XN7 944 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 FLCNQ8NFG4 579 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 NSMCE3Q96MG7 304 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 TSSK3Q96PN8 268 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 TMEM221A6NGB7 291 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 RPS17P08708 135 aaKnown RBP15.01□□□□□ -0.01
UPF1-204ENST00000596842 BMP1P13497 986 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 LPOP22079 712 aaPredicted RBP15.01□□□□□ -0.01
UPF1-204ENST00000596842 CD97P48960 835 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 EMX2Q04743 252 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 PAGE2BQ5JRK9 111 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 FAM117BQ6P1L5 589 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 NEK10Q6ZWH5 1172 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 SCAIQ8N9R8 606 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 SUSD3Q96L08 255 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 TDRD1Q9BXT4 1180 aaKnown RBP15.01□□□□□ -0.01
UPF1-204ENST00000596842 EHD1Q9H4M9 534 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 ORC6Q9Y5N6 252 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms