RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MAP3K13O43283 966 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 PIM1P11309 404 aaPredicted RBP19.89■□□□□ 0.77
CLN3-230ENST00000568076 G6PDP11413 515 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 AOAHP28039 575 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 PPIGQ13427 754 aaKnown RBP eCLIP19.89■□□□□ 0.776e-7■■□□□ 11.8
CLN3-230ENST00000568076 DMC1Q14565 340 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 PDK3Q15120 406 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 AAK1Q2M2I8 961 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 AP5B1Q2VPB7 878 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 DET1Q7L5Y6 550 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 ZUFSPQ96AP4 578 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 UHRF1Q96T88 793 aaPredicted RBP19.89■□□□□ 0.77
CLN3-230ENST00000568076 TRIM54Q9BYV2 358 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 FARSBQ9NSD9 589 aaKnown RBP19.89■□□□□ 0.77
CLN3-230ENST00000568076 KLHL42Q9P2K6 505 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 TBC1D14Q9P2M4 693 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 LEF1Q9UJU2 399 aaPredicted RBP19.89■□□□□ 0.77
CLN3-230ENST00000568076 ANGPTL3Q9Y5C1 460 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 FFAR3O14843 346 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 ANKRD28O15084 1053 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 GPR42O15529 346 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 DENRO43583 198 aaKnown RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 TLL1O43897 1013 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 LEFTY1O75610 366 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 RSL1D1O76021 490 aaKnown RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 GBX1Q14549 363 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 CBX2Q14781 532 aaPredicted RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 ZXDCQ2QGD7 858 aaPredicted RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 HABP4Q5JVS0 413 aaKnown RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 ZNF697Q5TEC3 545 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 ZDHHC20Q5W0Z9 365 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 HMBOX1Q6NT76 420 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 CYP20A1Q6UW02 462 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 GRASPQ7Z6J2 395 aaPredicted RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 PLPP6Q8IY26 295 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 KIAA2013Q8IYS2 634 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 CHCHD4Q8N4Q1 142 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 CANT1Q8WVQ1 401 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 ING5Q8WYH8 240 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 SCAMP4Q969E2 229 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 ULK4Q96C45 1275 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 MTG2Q9H4K7 406 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 TMEM45AQ9NWC5 275 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 CNOT6Q9ULM6 557 aaKnown RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 PDE10AQ9Y233 779 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 RNF11Q9Y3C5 154 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 MTX2O75431 263 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 OR56A5P0C7T3 313 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 ZNF26P17031 533 aaPredicted RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 POLR2LP62875 67 aaKnown RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 CDKL1Q00532 357 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 ARHGEF7Q14155 803 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 BRAT1Q6PJG6 821 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 HSD11B1LQ7Z5J1 315 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 VRK3Q8IV63 474 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 AHI1Q8N157 1196 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 GALNT4Q8N4A0 578 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 HEPHQ9BQS7 1158 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 NTMT1Q9BV86 223 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 INTS7Q9NVH2 962 aaKnown RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 SUN2Q9UH99 717 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 POLR3HQ9Y535 204 aaPredicted RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 AK5Q9Y6K8 562 aa19.88■□□□□ 0.77
CLN3-230ENST00000568076 PRRC2BQ5JSZ5 2229 aaKnown RBP19.88■□□□□ 0.77
CLN3-230ENST00000568076 A0A1W2PQ67 120 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 LOC730098B7Z3J9 87 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 CTSLP07711 333 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 EPORP19235 508 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 POLR2EP19388 210 aaKnown RBP19.87■□□□□ 0.77
CLN3-230ENST00000568076 HOXA9P31269 272 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 RPIAP49247 311 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 FPGSQ05932 587 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 HSPA14Q0VDF9 509 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 BNIP2Q12982 314 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 PRKG2Q13237 762 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 METTL2BQ6P1Q9 378 aaKnown RBP19.87■□□□□ 0.77
CLN3-230ENST00000568076 SLC2A7Q6PXP3 512 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 UGT2A3Q6UWM9 527 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 SERPINA13PQ6UXR4 307 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 RTL10Q7L3V2 364 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 SPPL2CQ8IUH8 684 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 LRRC3BQ96PB8 259 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 SPATA16Q9BXB7 569 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 PKD2L2Q9NZM6 624 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 MARK1Q9P0L2 795 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 RAB26Q9ULW5 256 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 SNX13Q9Y5W8 968 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 MYO7AQ13402 2215 aa19.87■□□□□ 0.77
CLN3-230ENST00000568076 STK16O75716 305 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 ANXA5P08758 320 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 ATP1B2P14415 290 aaPredicted RBP19.86■□□□□ 0.77
CLN3-230ENST00000568076 EPB42P16452 691 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 CEBPBP17676 345 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 CASP2P42575 452 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 RECQLP46063 649 aaPredicted RBP19.86■□□□□ 0.77
CLN3-230ENST00000568076 GSK3BP49841 420 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 GRM2Q14416 872 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 ARSIQ5FYB1 569 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 RNF220Q5VTB9 566 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 IRAK1BP1Q5VVH5 260 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms