RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 GPR150Q8NGU9 434 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 NAT14Q8WUY8 206 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 CPT1BQ92523 772 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 ELMO1Q92556 727 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 SLCO2A1Q92959 643 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 USP7Q93009 1102 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 NAF1Q96HR8 494 aaKnown RBP13.08□□□□□ -0.32
CLK3-216ENST00000564468 C9orf72Q96LT7 481 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 TEFMQ96QE5 360 aaKnown RBP13.08□□□□□ -0.32
CLK3-216ENST00000564468 KIR3DX1Q9H7L2 352 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 KCND1Q9NSA2 647 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 SYBUQ9NX95 663 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 SLC39A1Q9NY26 324 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 OGFRQ9NZT2 677 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 KLHL3Q9UH77 587 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 PCYOX1Q9UHG3 505 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 PCDHB11Q9Y5F2 797 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 PCDHGA3Q9Y5H0 932 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 CFAP20Q9Y6A4 193 aaKnown RBP13.08□□□□□ -0.32
CLK3-216ENST00000564468 SDK2Q58EX2 2172 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 ZNF462Q96JM2 2506 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 PCM1Q15154 2024 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 PMS2P1A4D2B8 440 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 EFCAB7A8K855 629 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 CCDC188H7C350 402 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 AGRPO00253 132 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 PRMT5O14744 637 aaPredicted RBP13.07□□□□□ -0.32
CLK3-216ENST00000564468 KLK10O43240 276 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 NDUFS3O75489 264 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 PRB1P04280 392 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 FGF3P11487 239 aaPredicted RBP13.07□□□□□ -0.32
CLK3-216ENST00000564468 CCL4P13236 92 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 NMBRP28336 390 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 ETV5P41161 510 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 SYTL3Q4VX76 610 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 DCAF12Q5T6F0 453 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 RNF187Q5TA31 235 aaPredicted RBP13.07□□□□□ -0.32
CLK3-216ENST00000564468 ARMC6Q6NXE6 501 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 SYDE1Q6ZW31 735 aaPredicted RBP13.07□□□□□ -0.32
CLK3-216ENST00000564468 OOSP2Q86WS3 158 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 LRRC6Q86X45 466 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 OTUD6BQ8N6M0 293 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 ACVR1CQ8NER5 493 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 CAPZA3Q96KX2 299 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 RMDN2Q96LZ7 410 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 TGM7Q96PF1 710 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 PANX3Q96QZ0 392 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 FERD3LQ96RJ6 166 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 TCF12Q99081 682 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 CD180Q99467 661 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 ZPBPQ9BS86 351 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 DDA1Q9BW61 102 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 CARD6Q9BX69 1037 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 OR52A5Q9H2C5 316 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 MVB12BQ9H7P6 319 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 ASIC3Q9UHC3 531 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 SLC24A2Q9UI40 661 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 CFAP46Q8IYW2 2715 aa13.07□□□□□ -0.32
CLK3-216ENST00000564468 PRAMEF33A0A0G2JMD5 474 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 TEX51A0A1B0GUA7 166 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 FAM237BA0A1B0GVD1 139 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 MATN2O00339 956 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 KPNA5O15131 536 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 KDM1AO60341 852 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 PRAMEF10O60809 474 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 RASSF9O75901 435 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 VAPBO95292 243 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 LIPCP11150 499 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 ITPKBP27987 946 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 GFERP55789 205 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 TMPRSS3P57727 454 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 MC2RQ01718 297 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 TLE3Q04726 772 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 PRKAA1Q13131 559 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 PTK6Q13882 451 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 ZNF658BQ4V348 819 aaPredicted RBP13.06□□□□□ -0.32
CLK3-216ENST00000564468 ANKRD22Q5VYY1 191 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 PTRHD1Q6GMV3 140 aaKnown RBP13.06□□□□□ -0.32
CLK3-216ENST00000564468 KIAA0930Q6ICG6 404 aaPredicted RBP13.06□□□□□ -0.32
CLK3-216ENST00000564468 IRGCQ6NXR0 463 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 CEACAM20Q6UY09 585 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 PRSS42Q7Z5A4 293 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 CAND1Q86VP6 1230 aaKnown RBP13.06□□□□□ -0.32
CLK3-216ENST00000564468 CREG2Q8IUH2 290 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 CARFQ8N187 725 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 LILRA3Q8N6C8 439 aaPredicted RBP13.06□□□□□ -0.32
CLK3-216ENST00000564468 NAT8LQ8N9F0 302 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 SPDYE1Q8NFV5 336 aaPredicted RBP13.06□□□□□ -0.32
CLK3-216ENST00000564468 ASZ1Q8WWH4 475 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 UBXN4Q92575 508 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 RSC1A1Q92681 617 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 TFGQ92734 400 aaPredicted RBP13.06□□□□□ -0.32
CLK3-216ENST00000564468 ART4Q93070 314 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 MFSD3Q96ES6 412 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 CRELD1Q96HD1 420 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 FCRL3Q96P31 734 aaPredicted RBP13.06□□□□□ -0.32
CLK3-216ENST00000564468 SERPINB12Q96P63 405 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 DDX47Q9H0S4 455 aaKnown RBP13.06□□□□□ -0.32
CLK3-216ENST00000564468 ZNF768Q9H5H4 540 aaKnown RBP13.06□□□□□ -0.32
CLK3-216ENST00000564468 PRORYQ9H606 182 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms