RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CMTM6Q9NX76 183 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 OSGIN1Q9UJX0 560 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 SNX6Q9UNH7 406 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 MTF2Q9Y483 593 aaPredicted RBP13.11□□□□□ -0.31
CLK3-206ENST00000562078 SNX10Q9Y5X0 201 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 TRPC5OSA6NMA1 111 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 ATP6V1G2-DDX39BF2Z307 99 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 PITPNM1O00562 1244 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 XPNPEP2O43895 674 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 NBNO60934 754 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 SOAT2O75908 522 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 ERCC2P18074 760 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 CHRM3P20309 590 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 CYP2A7P20853 494 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 PSMB4P28070 264 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 LIMK2P53671 638 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 CD47Q08722 323 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 IFRD2Q12894 506 aaPredicted RBP13.1□□□□□ -0.31
CLK3-206ENST00000562078 SEMA3BQ13214 749 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 TRIM60Q495X7 471 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 ERAP2Q6P179 960 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 CNSTQ6PJW8 725 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 SLC24A5Q71RS6 500 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 PIAS4Q8N2W9 510 aaPredicted RBP13.1□□□□□ -0.31
CLK3-206ENST00000562078 PARP16Q8N5Y8 322 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 YIPF6Q96EC8 236 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 CERS2Q96G23 380 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 FCRL3Q96P31 734 aaPredicted RBP13.1□□□□□ -0.31
CLK3-206ENST00000562078 FYTTD1Q96QD9 318 aaKnown RBP13.1□□□□□ -0.31
CLK3-206ENST00000562078 OMDQ99983 421 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 C1QTNF7Q9BXJ2 289 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 TNFRSF12AQ9NP84 129 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 MAP10Q9P2G4 905 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 FBXW11Q9UKB1 542 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 MN1Q10571 1320 aaPredicted RBP13.1□□□□□ -0.31
CLK3-206ENST00000562078 CCDC154A6NI56 674 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 KCNK1O00180 336 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 SLC1A7O00341 560 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 B4GALT3O60512 393 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 LRIG2O94898 1065 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 CYP11A1P05108 521 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 SPRP35270 261 aaPredicted RBP13.1□□□□□ -0.31
CLK3-206ENST00000562078 HCAR3P49019 387 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 SERPINH1P50454 418 aaKnown RBP13.1□□□□□ -0.31
CLK3-206ENST00000562078 MLLT6P55198 1093 aaPredicted RBP13.1□□□□□ -0.31
CLK3-206ENST00000562078 GABARAPL2P60520 117 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 SCAPQ12770 1279 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 TYSND1Q2T9J0 566 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 FAM171BQ6P995 826 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 RTN4RL1Q86UN2 441 aaPredicted RBP13.1□□□□□ -0.31
CLK3-206ENST00000562078 NOXA1Q86UR1 476 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 LRRTM3Q86VH5 581 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 FUNDC1Q8IVP5 155 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 SPATA6LQ8N4H0 392 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 NPWQ8N729 165 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 LINC01599Q8WXQ3 324 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 RORBQ92753 470 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 LGALS12Q96DT0 336 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 SCLYQ96I15 445 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 UBXN10Q96LJ8 280 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 COLEC11Q9BWP8 271 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 BEX2Q9BXY8 128 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 TIGARQ9NQ88 270 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 HCN4Q9Y3Q4 1203 aa13.1□□□□□ -0.31
CLK3-206ENST00000562078 TET1Q8NFU7 2136 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 BPTFQ12830 3046 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 NYNRINQ9P2P1 1898 aaKnown RBP13.09□□□□□ -0.31
CLK3-206ENST00000562078 TCRBV5S2A0A599 114 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 OR5K3A6NET4 321 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 M0QZQ0 153 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 DLX3O60479 287 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 PRKD3O94806 890 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 MPOP05164 745 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 ALPLP05186 524 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 GPIP06744 558 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 YWHAQP27348 245 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 PSMB9P28065 219 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 GLUD2P49448 558 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 MNX1P50219 401 aaPredicted RBP13.09□□□□□ -0.31
CLK3-206ENST00000562078 ALDH3A2P51648 485 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 AIF1P55008 147 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 CCL23P55773 120 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 TLE2Q04725 743 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 TOR2AQ5JU69 321 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 KIAA1841Q6NSI8 718 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 FAM122CQ6P4D5 195 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 HACD2Q6Y1H2 254 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 TAC4Q86UU9 113 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 CLYBLQ8N0X4 340 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 ZNF567Q8N184 647 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 DBF4BQ8NFT6 615 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 SCAMP5Q8TAC9 235 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 GIMAP1Q8WWP7 306 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 STON2Q8WXE9 905 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 PGAP3Q96FM1 320 aaPredicted RBP13.09□□□□□ -0.31
CLK3-206ENST00000562078 METTL2AQ96IZ6 378 aaKnown RBP13.09□□□□□ -0.31
CLK3-206ENST00000562078 PKMYT1Q99640 499 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 NTN4Q9HB63 628 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 FBRSL1Q9HCM7 1045 aaKnown RBP13.09□□□□□ -0.31
CLK3-206ENST00000562078 RANGRFQ9HD47 186 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms