RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 FBXL22Q6P050 247 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 GLRX5Q86SX6 157 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 C8orf59Q8N0T1 100 aaPredicted RBP13.77□□□□□ -0.2
LIG1-203ENST00000536218 PIK3R3Q92569 461 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 PSMG2Q969U7 264 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 VPS39Q96JC1 886 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 TSGA13Q96PP4 275 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 TSEN34Q9BSV6 310 aaKnown RBP13.77□□□□□ -0.2
LIG1-203ENST00000536218 ASPSCR1Q9BZE9 553 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 MKRN2Q9H000 416 aaKnown RBP13.77□□□□□ -0.2
LIG1-203ENST00000536218 NARFLQ9H6Q4 476 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 HPS4Q9NQG7 708 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 VWA7Q9Y334 891 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 PCDHB3Q9Y5E6 796 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 CCL22O00626 93 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 NME4O00746 187 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 AP3D1O14617 1153 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 SYN3O14994 580 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 SSX4O60224 188 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 PRKACAP17612 351 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 FSHRP23945 695 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 PSMB9P28065 219 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 RRM2P31350 389 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 PSMD8P48556 350 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 LIMK2P53671 638 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 POU6F2P78424 691 aaPredicted RBP13.77□□□□□ -0.21
LIG1-203ENST00000536218 SELPLGQ14242 412 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 ZNF460Q14592 562 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 STK32CQ86UX6 486 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 ADGRG5Q8IZF4 528 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 TRPV3Q8NET8 790 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 HMGCLL1Q8TB92 370 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 MYEOVQ96EZ4 313 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 SLC45A3Q96JT2 553 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 DEFB118Q96PH6 123 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 FCRL5Q96RD9 977 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 SP110Q9HB58 689 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 MAGEB16A2A368 324 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 H3BUI4 141 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 TMEM189-UBE2V1I3L0A0 370 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 SCAMP3O14828 347 aaKnown RBP13.77□□□□□ -0.21
LIG1-203ENST00000536218 POLR1CO15160 346 aaPredicted RBP13.77□□□□□ -0.21
LIG1-203ENST00000536218 SLC22A1O15245 554 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 H2AFYO75367 372 aaKnown RBP13.77□□□□□ -0.21
LIG1-203ENST00000536218 GJB3O75712 270 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 HTR1AP08908 422 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 CD86P42081 329 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 KCNQ1P51787 676 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 USP10Q14694 798 aaKnown RBP13.77□□□□□ -0.21
LIG1-203ENST00000536218 TUBA3EQ6PEY2 450 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 USP51Q70EK9 711 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 UBE2Q1Q7Z7E8 422 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 SLC51BQ86UW2 128 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 SLC39A13Q96H72 371 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 CCDC120Q96HB5 630 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 NODALQ96S42 347 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 ZYG11BQ9C0D3 744 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 TLK1Q9UKI8 766 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 POLHQ9Y253 713 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 THSD7BQ9C0I4 1608 aa13.77□□□□□ -0.21
LIG1-203ENST00000536218 PCM1Q15154 2024 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 ZNF99A8MXY4 864 aaPredicted RBP13.76□□□□□ -0.21
LIG1-203ENST00000536218 SLCO1B7G3V0H7 640 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 NR5A2O00482 541 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 APOA1P02647 267 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 GALTP07902 379 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 POLR2CP19387 275 aaPredicted RBP13.76□□□□□ -0.21
LIG1-203ENST00000536218 WNT3AP56704 352 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 DENND5AQ6IQ26 1287 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 PKN3Q6P5Z2 889 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 PIK3C3Q8NEB9 887 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 GRPEL2Q8TAA5 225 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 BCL7CQ8WUZ0 217 aaPredicted RBP13.76□□□□□ -0.21
LIG1-203ENST00000536218 HDAC2Q92769 488 aaKnown RBP13.76□□□□□ -0.21
LIG1-203ENST00000536218 MUL1Q969V5 352 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 TLR8Q9NR97 1041 aaKnown RBP13.76□□□□□ -0.21
LIG1-203ENST00000536218 ISPDA4D126 451 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 KRT87PA6NCN2 255 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 TLR5O60602 858 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 NDST3O95803 873 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 AHSGP02765 367 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 CES1P23141 567 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 GEMP55040 296 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 DSC2Q02487 901 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 STK11Q15831 433 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 PCID2Q5JVF3 399 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 ARTNQ5T4W7 220 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 FAM205BPQ63HN1 556 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 ZNF544Q6NX49 715 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 GDPD3Q7L5L3 318 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 TMCO2Q7Z6W1 182 aaPredicted RBP13.76□□□□□ -0.21
LIG1-203ENST00000536218 HID1Q8IV36 788 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 FAM109AQ8N4B1 249 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 RORBQ92753 470 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 RPL3LQ92901 407 aaKnown RBP13.76□□□□□ -0.21
LIG1-203ENST00000536218 MYRFLQ96LU7 910 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 RNF145Q96MT1 663 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 SLC25A23Q9BV35 468 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 BBS2Q9BXC9 721 aa13.76□□□□□ -0.21
LIG1-203ENST00000536218 PRRG3Q9BZD7 231 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms