RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 HTR1AP08908 422 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 CTPS1P17812 591 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 RAD23AP54725 363 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 MGAT3Q09327 533 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TWF1Q12792 350 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 SPATS1Q496A3 300 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 GTF2IRD2BQ6EKJ0 949 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 GALNT5Q7Z7M9 940 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TMEM179BQ7Z7N9 219 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 GTF2IRD2Q86UP8 949 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 DPP10Q8N608 796 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 ZBTB8BQ8NAP8 495 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 ABHD11Q8NFV4 315 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 PNPT1Q8TCS8 783 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 RAB2BQ8WUD1 216 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 PSKH2Q96QS6 385 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TUBA1CQ9BQE3 449 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 KLQ9UEF7 1012 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 BAG5Q9UL15 447 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 AGO1Q9UL18 857 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 ANGPTL3Q9Y5C1 460 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 SNX5Q9Y5X3 404 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 OR7A17O14581 309 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 KLK8O60259 260 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 TULP3O75386 442 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 ZNF12P17014 697 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 CD97P48960 835 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 DUSP4Q13115 394 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 IGFN1Q86VF2 1251 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 SLC13A3Q8WWT9 602 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 MGME1Q9BQP7 344 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 UGT2B28Q9BY64 529 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 TRMT13Q9NUP7 481 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 MOXD2PA6NHM9 499 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 C16orf96A6NNT2 1141 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 FTH1P02794 183 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 BMP1P13497 986 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 HTR1BP28222 390 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 AKT1P31749 480 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 RXRGP48443 463 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 TTPAP49638 278 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 BCAP31P51572 246 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 GTF2H2Q13888 395 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 DSC3Q14574 896 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 SKIV2LQ15477 1246 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 RGS21Q2M5E4 152 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 GTF2H2CQ6P1K8 395 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 ANKRD46Q86W74 232 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 DENND1CQ8IV53 801 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 ZBTB18Q99592 522 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 C1QTNF3Q9BXJ4 246 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 TDRD1Q9BXT4 1180 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 PCDH12Q9NPG4 1184 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 GKN1Q9NS71 199 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 DNAJB9Q9UBS3 223 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 ANKRD66B4E2M5 251 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 H0Y626 953 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 ANKRD28O15084 1053 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 MITFO75030 526 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 DUSP11O75319 330 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 OAZ2O95190 189 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 TRIM16O95361 564 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 B3GALT4O96024 378 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 IDUAP35475 653 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 MAPKAPK2P49137 400 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 VAC14Q08AM6 782 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 SPIDRQ14159 915 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 SIM2Q14190 667 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 DPY19L1Q2PZI1 675 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 PTRHD1Q6GMV3 140 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 CNIH3Q8TBE1 160 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 GTF2H4Q92759 462 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 BHMTQ93088 406 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 SLC47A1Q96FL8 570 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 MBOAT4Q96T53 435 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 OSBPL10Q9BXB5 764 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 DPY30Q9C005 99 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 ABCG8Q9H221 673 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 HEBP1Q9NRV9 189 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 PCDHB9Q9Y5E1 797 aa9.1□□□□□ -0.95
LIMCH1-215ENST00000512632 FNDC1Q4ZHG4 1894 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 ELOVL7A1L3X0 281 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 A8MX80 341 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 NT5C1B-RDH14C9J2C7 533 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 SEC22BO75396 215 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 CYP4B1P13584 511 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 IL5RAQ01344 420 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 CYP4F3Q08477 520 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 TRIM16LQ309B1 348 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 RNF168Q8IYW5 571 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 C10orf111Q8N326 155 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 OR6K2Q8NGY2 324 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 TRUB1Q8WWH5 349 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 FAM193BQ96PV7 902 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 SLC6A13Q9NSD5 602 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 ZBBXA8MT70 800 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 CXCR6O00574 342 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 FFAR2O15552 330 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 PORP16435 677 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 JUNBP17275 347 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms