RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 NFE2L1Q14494 772 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 KCNJ11Q14654 390 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 LONRF1Q17RB8 773 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 WHAMMP3Q1A5X7 153 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 TTLL9Q3SXZ7 439 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 PERM1Q5SV97 790 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 BROXQ5VW32 411 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 ARMC3Q5W041 872 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 DENND5AQ6IQ26 1287 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 UGT3A1Q6NUS8 523 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 IRGCQ6NXR0 463 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 IYDQ6PHW0 289 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 CES3Q6UWW8 571 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 CEP128Q6ZU80 1094 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 KANSL1Q7Z3B3 1105 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 SPRED1Q7Z699 444 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 CCDC25Q86WR0 208 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 LRRC6Q86X45 466 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 ZNF761Q86XN6 746 aaPredicted RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 NAGSQ8N159 534 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 FBXO39Q8N4B4 442 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 MCUQ8NE86 351 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 SPATA4Q8NEY3 305 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 OR2L2Q8NH16 312 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 CFAP61Q8NHU2 1237 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 WDR36Q8NI36 951 aaKnown RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 MAGEC3Q8TD91 643 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 ASZ1Q8WWH4 475 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 PATE1Q8WXA2 126 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 ZCCHC14Q8WYQ9 949 aaKnown RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 CPT1BQ92523 772 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 SERPINB12Q96P63 405 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 CITED4Q96RK1 184 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 WWP1Q9H0M0 922 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 MRM3Q9HC36 420 aaKnown RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 THSD1Q9NS62 852 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 MTRF1LQ9UGC7 380 aaKnown RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 SLC2A6Q9UGQ3 507 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 SLC39A10Q9ULF5 831 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 RIMKLBQ9ULI2 386 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 ATXN7L1Q9ULK2 861 aaPredicted RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 CNOT6Q9ULM6 557 aaKnown RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 PNMA8BQ9ULN7 279 aaPredicted RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 ASF1AQ9Y294 204 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 PCDHB1Q9Y5F3 818 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 CFAP20Q9Y6A4 193 aaKnown RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 PIKFYVEQ9Y2I7 2098 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 SPTBN2O15020 2390 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 ZNF106Q9H2Y7 1883 aaKnown RBP7.87□□□□□ -1.15
USP40-216ENST00000485943 RP1P56715 2156 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 CCDC187A0A096LP49 1063 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 C17orf113A0A1B0GUU1 675 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 FAM237BA0A1B0GVD1 139 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 GSAPA4D1B5 854 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 MROH6A6NGR9 719 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 OR52A4PA6NMU1 304 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 TTLL8A6PVC2 850 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 D6RAR5 112 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 NOBOXO60393 691 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 AVILO75366 819 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 USP1O94782 785 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 UBXN7O94888 489 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 PROS1P07225 676 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 TYRP1P17643 537 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 MAP4P27816 1152 aaKnown RBP7.87□□□□□ -1.15
USP40-216ENST00000485943 NMBRP28336 390 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 FMO4P31512 558 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 CTSCP53634 463 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 ITGA8P53708 1063 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 SHC2P98077 582 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 TAGLNQ01995 201 aaKnown RBP7.87□□□□□ -1.15
USP40-216ENST00000485943 CAV1Q03135 178 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 HSPA14Q0VDF9 509 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 RPA4Q13156 261 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 TSTA3Q13630 321 aaPredicted RBP7.87□□□□□ -1.15
USP40-216ENST00000485943 DBN1Q16643 649 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 CLPPQ16740 277 aaPredicted RBP7.87□□□□□ -1.15
USP40-216ENST00000485943 ISXQ2M1V0 245 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 BCL7AQ4VC05 210 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 ZNF470Q6ECI4 717 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 NEPROQ6NW34 567 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 OGFOD3Q6PK18 319 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 RAB11FIP2Q7L804 512 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 KCNMB4Q86W47 210 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 NRROSQ86YC3 692 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 CREG2Q8IUH2 290 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 LMNTD2Q8IXW0 634 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 SFRP1Q8N474 314 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 CEP112Q8N8E3 955 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 PYROXD1Q8WU10 500 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 LCN9Q8WX39 176 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 MFSD3Q96ES6 412 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 SCARF2Q96GP6 870 aaPredicted RBP7.87□□□□□ -1.15
USP40-216ENST00000485943 ZDHHC12Q96GR4 267 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 TGM7Q96PF1 710 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 TRIM51Q9BSJ1 452 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 FOXP3Q9BZS1 431 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 TRIT1Q9H3H1 467 aaKnown RBP7.87□□□□□ -1.15
USP40-216ENST00000485943 SRMSQ9H3Y6 488 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 COG4Q9H9E3 785 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms