RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 TRIM31Q9BZY9 425 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 CDH19Q9H159 772 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 DPH5Q9H2P9 285 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 SYNDIG1Q9H7V2 258 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 PDFQ9HBH1 243 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 PREBQ9HCU5 417 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 PRSS16Q9NQE7 514 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 HOMER3Q9NSC5 361 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 ERVK13-1Q9NX77 482 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 ZNF148Q9UQR1 794 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 ZNF510Q9Y2H8 683 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 TBC1D30Q9Y2I9 924 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 GPR55Q9Y2T6 319 aaPredicted RBP4.76□□□□□ -1.65
PTPN4-206ENST00000441089 SNX24Q9Y343 169 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 PCDHGB7Q9Y5F8 929 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 OR51B4Q9Y5P0 310 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 CSNK1G3Q9Y6M4 447 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 CACNA1CQ13936 2221 aa4.76□□□□□ -1.65
PTPN4-206ENST00000441089 CROCCQ5TZA2 2017 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TBC1D3DA0A087WVF3 549 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TBC1D3IA0A087WXS9 549 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TBC1D3EA0A087X179 549 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TBC1D3KA0A087X1G2 549 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TCRBV7S3A2A0A539 114 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TARSL2A2RTX5 802 aaKnown RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 CFAP69A5D8W1 941 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TBC1D3FA6NER0 549 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 C5orf60A6NFR6 353 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TBC1D3LB9A6J9 549 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 D6RAR5 112 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 F5H423 210 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 OVOL3O00110 214 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 KCNK1O00180 336 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 RNF103O00237 685 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 NTN3O00634 580 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 DNALI1O14645 258 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TPP1O14773 563 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 PPP1R12AO14974 1030 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 MUSKO15146 869 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 KCNN4O15554 427 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 SNAP91O60641 907 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 RAMP2O60895 175 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 CLDN11O75508 207 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 ZMPSTE24O75844 475 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TMEM63AO94886 807 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 SEC31AO94979 1220 aaKnown RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 NADKO95544 446 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 IFNB1P01574 187 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 ATP5BP06576 529 aaKnown RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 RHOCP08134 193 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 FAM153BP0C7A2 387 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TBC1D3HP0C7X1 549 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 HGFP14210 728 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 H2AFXP16104 143 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 OR1E1P30953 314 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 CD70P32970 193 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 SERPINB6P35237 376 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 PTGER4P35408 488 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 CSKP41240 450 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 NDST2P52849 883 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 PER3P56645 1201 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 ERVFRD-1P60508 538 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 ARF5P84085 180 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 MC1RQ01726 317 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 GNA12Q03113 381 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 AP1B1Q10567 949 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 IHHQ14623 411 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 PDK1Q15118 436 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 CST6Q15828 149 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 P3H1Q32P28 736 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 FAM153CQ494X1 144 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 MPPE1Q53F39 396 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 ANKRD39Q53RE8 183 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 ANKRD20A2Q5SQ80 823 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 MPP7Q5T2T1 576 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 UBAP2Q5T6F2 1119 aaKnown RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 RNASEH2BQ5TBB1 312 aaKnown RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 FAXCQ5TGI0 409 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 ANKRD20A1Q5TYW2 823 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 ANKRD20A3Q5VUR7 823 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 ANKRD22Q5VYY1 191 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 RNF219Q5W0B1 726 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 SP5Q6BEB4 398 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TBC1D3GQ6DHY5 549 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TBC1D3CQ6IPX1 549 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 WDR93Q6P2C0 686 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 GALNT18Q6P9A2 607 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 FBXO38Q6PIJ6 1188 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 CRTC3Q6UUV7 619 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 CRTC1Q6UUV9 634 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 LEKR1Q6ZMV7 388 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 MAATS1Q7Z4T9 603 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 SETD3Q86TU7 594 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 DCP2Q8IU60 420 aaKnown RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 TBC1D3Q8IZP1 549 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-206ENST00000441089 APCDD1Q8J025 514 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 ZNF567Q8N184 647 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 PGBD5Q8N414 524 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 CARNMT1Q8N4J0 409 aa4.75□□□□□ -1.65
PTPN4-206ENST00000441089 LZTR1Q8N653 840 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms