RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 RETREG3Q86VR2 466 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 RBFAQ8N0V3 343 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 GAB3Q8WWW8 586 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 DEPDC7Q96QD5 511 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 PRKAG2Q9UGJ0 569 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 COL22A1Q8NFW1 1626 aaPredicted RBP12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 PRSS51A0A1B0GVH4 220 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 SLC28A1O00337 649 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 CHRM1P11229 460 aaPredicted RBP12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 CD1DP15813 335 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 FLT3LGP49771 235 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 TUBA4AP68366 448 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 MRPL28Q13084 256 aaKnown RBP12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 ZNF284Q2VY69 593 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 PDZK1Q5T2W1 519 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 BBS7Q8IWZ6 715 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 CAMKK1Q8N5S9 505 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 C3orf58Q8NDZ4 430 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 BRI3BPQ8WY22 251 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 MEAF6Q9HAF1 191 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 MAP10Q9P2G4 905 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 MTRRQ9UBK8 725 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 DNAJB9Q9UBS3 223 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 CEPT1Q9Y6K0 416 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 IFRD1O00458 451 aaPredicted RBP12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 FPGTO14772 594 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 SUV39H1O43463 412 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 AIREO43918 545 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 ITGB1P05556 798 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 CD36P16671 472 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 MAP2K4P45985 399 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 STC1P52823 247 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 SFSWAPQ12872 951 aaKnown RBP12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 RFTN1Q14699 578 aaPredicted RBP12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 UAP1L1Q3KQV9 507 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 PKDCCQ504Y2 493 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 RANBP10Q6VN20 620 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 KRTCAP2Q8N6L1 136 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 PHF10Q8WUB8 498 aaKnown RBP12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 NUDT8Q8WV74 236 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 STON2Q8WXE9 905 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 DMRTB1Q96MA1 342 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 C2orf49Q9BVC5 232 aaPredicted RBP12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 IGSF5Q9NSI5 407 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 PHF24Q9UPV7 400 aa12.23□□□□□ -0.45
SNRNP48-201ENST00000342415 ANKDD1BA6NHY2 528 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 H7C4K7 107 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 KPNA3O00505 521 aaPredicted RBP12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 ATE1O95260 518 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 ZNF12P17014 697 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 LEPRP48357 1165 aaKnown RBP12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 DNAJB13P59910 316 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 CYP2A13Q16696 494 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 LYSMD3Q7Z3D4 306 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 FAM9CQ8IZT9 166 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 PSD4Q8NDX1 1056 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 TOP1MTQ969P6 601 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 WDR12Q9GZL7 423 aaKnown RBP12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 ABCB9Q9NP78 766 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 RPS6KA6Q9UK32 745 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 PRKAB1Q9Y478 270 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 ZNF451Q9Y4E5 1061 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 ZNF99A8MXY4 864 aaPredicted RBP12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 CDH1P12830 882 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 SERPINA4P29622 427 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 KCNC1P48547 511 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 PHKG1Q16816 387 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 OR4F3Q6IEY1 312 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 ANKS3Q6ZW76 656 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 TRAPPC5Q8IUR0 188 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 AADATQ8N5Z0 425 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 PHF21AQ96BD5 680 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 KCNS3Q9BQ31 491 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 TMEM245Q9H330 911 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 OSGEPL1Q9H4B0 414 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 GSTO2Q9H4Y5 243 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 RMI1Q9H9A7 625 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 MAGEE1Q9HCI5 957 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 DYRK4Q9NR20 520 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 H2AFY2Q9P0M6 372 aaPredicted RBP12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 KLHL3Q9UH77 587 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 RNF11Q9Y3C5 154 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 PCDHB3Q9Y5E6 796 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 LOC100130705A0A1B0GUX0 176 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 LOC730098B7Z3J9 87 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 LOC110117498-PIK3R3F6TDL0 507 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 ACSL4O60488 711 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 GPR32O75388 356 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 TRBC1P01850 177 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 UGT2B4P06133 528 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 VARSP26640 1264 aaKnown RBP12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 RFC2P35250 354 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 EEFSECP57772 596 aaKnown RBP12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 RPS14P62263 151 aaKnown RBP12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 CAMK2GQ13555 558 aaPredicted RBP12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 LRP8Q14114 963 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 RFX4Q33E94 735 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 CYP27C1Q4G0S4 372 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 CASP12Q6UXS9 341 aa12.22□□□□□ -0.45
SNRNP48-201ENST00000342415 AGMOQ6ZNB7 445 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms