RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 PABPN1LA6NDY0 278 aaKnown RBP13.12□□□□□ -0.31
HMGB1-202ENST00000339872 UBDO15205 165 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 GSC2O15499 205 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 GPC4O75487 556 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 RNASEH2AO75792 299 aaKnown RBP13.12□□□□□ -0.31
HMGB1-202ENST00000339872 ANXA5P08758 320 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 POU3F3P20264 500 aaPredicted RBP13.12□□□□□ -0.31
HMGB1-202ENST00000339872 GDF5P43026 501 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 MNAT1P51948 309 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 TMEM196Q5HYL7 178 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 SDE2Q6IQ49 451 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 ASB11Q8WXH4 323 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 ATP6V1E2Q96A05 226 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 TMEM159Q96B96 161 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 CCM2Q9BSQ5 444 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 TRIM54Q9BYV2 358 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 CD244Q9BZW8 370 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 OR2AG1Q9H205 316 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 TUBB1Q9H4B7 451 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 PARVBQ9HBI1 364 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 KLC4Q9NSK0 619 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 OPTCQ9UBM4 332 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 ANGPTL3Q9Y5C1 460 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 TRPM6Q9BX84 2022 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 IGLON5A6NGN9 336 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 ENO2P09104 434 aaPredicted RBP13.12□□□□□ -0.31
HMGB1-202ENST00000339872 LINC00032P0C843 101 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 UROSP10746 265 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 PRDX6P30041 224 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 PREPP48147 710 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 PKNOX1P55347 436 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 RPS14P62263 151 aaKnown RBP13.12□□□□□ -0.31
HMGB1-202ENST00000339872 SP140Q13342 867 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 STARD3Q14849 445 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 LRIT3Q3SXY7 679 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 NEK10Q6ZWH5 1172 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 LARP4Q71RC2 724 aaKnown RBP eCLIP13.12□□□□□ -0.31
HMGB1-202ENST00000339872 ADGRG6Q86SQ4 1221 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 TRAPPC5Q8IUR0 188 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 CDYL2Q8N8U2 506 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 PLA2G15Q8NCC3 412 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 OR2T3Q8NH03 318 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 UBTD2Q8WUN7 234 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 SLC12A9Q9BXP2 914 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 NUSAP1Q9BXS6 441 aaKnown RBP13.12□□□□□ -0.31
HMGB1-202ENST00000339872 IPPKQ9H8X2 491 aa13.12□□□□□ -0.31
HMGB1-202ENST00000339872 ZFC3H1O60293 1989 aaKnown RBP13.12□□□□□ -0.31
HMGB1-202ENST00000339872 OR7A17O14581 309 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 SLC22A2O15244 555 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 AP1G1O43747 822 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 MGRN1O60291 552 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 TM7SF2O76062 418 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 SLCO2B1O94956 709 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 CHEK2O96017 543 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 PCCBP05166 539 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 HIST1H2AGP0C0S8 130 aaPredicted RBP13.11□□□□□ -0.31
HMGB1-202ENST00000339872 EZRP15311 586 aaKnown RBP13.11□□□□□ -0.31
HMGB1-202ENST00000339872 CD1EP15812 388 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 HIST1H2ADP20671 130 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 CYP2A7P20853 494 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 CCNG1P51959 295 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 ERVPABLB-1P60509 514 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 GTF2H3Q13889 308 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 LETMD1Q6P1Q0 360 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 CHSY3Q70JA7 882 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 RALGPS2Q86X27 583 aaPredicted RBP13.11□□□□□ -0.31
HMGB1-202ENST00000339872 SNX32Q86XE0 403 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 LILRA3Q8N6C8 439 aaPredicted RBP13.11□□□□□ -0.31
HMGB1-202ENST00000339872 IL17RCQ8NAC3 791 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 GANCQ8TET4 914 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 HIST1H2AHQ96KK5 128 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 HIST1H2AJQ99878 128 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 H2AFJQ9BTM1 129 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 MKRN2Q9H000 416 aaKnown RBP13.11□□□□□ -0.31
HMGB1-202ENST00000339872 SLC6A17Q9H1V8 727 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 AKTIPQ9H8T0 292 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 KCNK12Q9HB15 430 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 GIMAP2Q9UG22 337 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 LIMD1Q9UGP4 676 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 TMEM265A0A087WTH1 108 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 K7EPI3 171 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 KATNA1O75449 491 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 KLF8O95600 359 aaPredicted RBP13.11□□□□□ -0.31
HMGB1-202ENST00000339872 OTCP00480 354 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 HOXB2P14652 356 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 ADSLP30566 484 aaPredicted RBP13.11□□□□□ -0.31
HMGB1-202ENST00000339872 CUL3Q13618 768 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 DNAL1Q4LDG9 190 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 EFL1Q7Z2Z2 1120 aaKnown RBP13.11□□□□□ -0.31
HMGB1-202ENST00000339872 NLRP8Q86W28 1048 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 FAM13CQ8NE31 585 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 OR4F6Q8NGB9 312 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 CFAP61Q8NHU2 1237 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 GLMNQ92990 594 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 TUBGCP3Q96CW5 907 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 GABRG3Q99928 467 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 C1orf21Q9H246 121 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 TRIM39Q9HCM9 518 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 ATXN10Q9UBB4 475 aa13.11□□□□□ -0.31
HMGB1-202ENST00000339872 POLG2Q9UHN1 485 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms