RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 TMEM119Q4V9L6 283 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 TTMPQ5BVD1 217 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ENPP6Q6UWR7 440 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ABRAXAS1Q6UWZ7 409 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 HSDL2Q6YN16 418 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 AMIGO3Q86WK7 504 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 TDRPQ86YL5 185 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 PARP9Q8IXQ6 854 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF100Q8IYN0 542 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 MDGA1Q8NFP4 955 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 SCAMP5Q8TAC9 235 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ATP13A2Q9NQ11 1180 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 PCDHB10Q9UN67 800 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 NHSL1Q5SYE7 1610 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 RTCAO00442 366 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 POP7O75817 140 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 FARS2O95363 451 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 LATS1O95835 1130 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 F11P03951 625 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 BMP7P18075 431 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 POLD2P49005 469 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 OR4D2P58180 307 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 DAOAP59103 153 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 RAB15P59190 212 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 NAE1Q13564 534 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 SNX20Q7Z614 316 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 VSTM4Q8IW00 320 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 SDR16C5Q8N3Y7 309 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 TMIEQ8NEW7 156 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 OR5M3Q8NGP4 307 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CENPIQ92674 756 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CENPTQ96BT3 561 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 RMI1Q9H9A7 625 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 TRIM39Q9HCM9 518 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 PCDHGC4Q9Y5F7 938 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 MON2Q7Z3U7 1717 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 MAGEB3O15480 346 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 IL6P05231 212 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CBSLP0DN79 551 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CTHP32929 405 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CBSP35520 551 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 NUDT2P50583 147 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ERVFC1P60507 584 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ETF1P62495 437 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CNGA3Q16281 694 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 C15orf59Q2T9L4 293 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 MROH9Q5TGP6 573 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 FIP1L1Q6UN15 594 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 IFNEQ86WN2 208 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 MCOLN2Q8IZK6 566 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 FMR1NBQ8N0W7 255 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 C1orf127Q8N9H9 656 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ENKURQ8TC29 256 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ACTL9Q8TC94 416 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ARRDC3Q96B67 414 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 VPS35Q96QK1 796 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 MNTQ99583 582 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 TRIM51Q9BSJ1 452 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 PREBQ9HCU5 417 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 KCNK6Q9Y257 313 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 NFAT5O94916 1531 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 WDR27A2RRH5 827 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 GRID2IPA4D2P6 1211 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CDC7O00311 574 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 BUD23O43709 281 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 B4GALT2O60909 372 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 KCNH1O95259 989 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 WDPCPO95876 746 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 NR1D1P20393 614 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 WNT3AP56704 352 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 DEFB133Q30KQ1 61 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CCNYL2Q5T2Q4 361 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 METTL21CQ5VZV1 264 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 OR4K2Q8NGD2 314 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 MUCL1Q96DR8 90 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 NSMCE3Q96MG7 304 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 MANSC1Q9H8J5 431 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CDHR5Q9HBB8 845 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 NDRG3Q9UGV2 375 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 SLC28A2O43868 658 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 GMFGO60234 142 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 HNRNPCP07910 306 aaKnown RBP eCLIP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ALOX5P09917 674 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 AVPR2P30518 371 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CDH5P33151 784 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 HSD17B3P37058 310 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 EIF2S3P41091 472 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF41P51814 821 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CAV3P56539 151 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 WLSQ5T9L3 541 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 NCEH1Q6PIU2 408 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 MFSD7Q6UXD7 560 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CCDC54Q8NEL0 328 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ETNPPLQ8TBG4 499 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 HDAC2Q92769 488 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 BCL2L14Q9BZR8 327 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ABCG8Q9H221 673 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 NBASA2RRP1 2371 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 PI4KAP42356 2102 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 SCDO00767 359 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms